| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,123,847 | T→A | 7.8% | intergenic (‑107/‑26) | USA300HOU_RS10825 ← / → lexA_2 | hypothetical protein/LexA repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,123,847 | 0 | T | A | 7.8% | 300.3 / 4.4 | 112 | intergenic (‑107/‑26) | USA300HOU_RS10825/lexA_2 | hypothetical protein/LexA repressor |
| Reads supporting (aligned to +/- strand): ref base T (54/48); new base A (2/8); total (56/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.36e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 122 total aligned reads displayed.
TAATCAGTCCTCAACTCTTTTAATGTTTTCATGTTGTCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCATTAACATAAAACCATCTACTTTAA > USA300TCH1516_ALE/2123709‑2123987 | tAATCAGTCCTCAACTCTTTTAATGTTTTCATGTTGTCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTataa > 1:957831/1‑141 (MQ=255) aaTCAGTCCTCAACTCTTTTAATGTTTTCATGTTGTCACCGCCTTTCGTACACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGTTATGAAAATTTCGTataat > 1:489917/1‑141 (MQ=255) aaTCAGTCCTCAACTCTTTTAATGTTTTCATGTTGTCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTataat > 1:1117522/1‑141 (MQ=255) aaTCAGTCCTCAACTCTTTTAATGTTTTCATGTTGTCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTataat > 1:211170/1‑141 (MQ=255) tCAGTCCTCAACTCTTTTAATGTTTTCATGTTGTCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTTTTTTTTTTCTTTACTATGATATGAAAATTTTGTAtaataa > 2:832410/1‑141 (MQ=255) cAGTCCTTAACTCTTTAAATGTTGTCATGTTGGCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGGCAACATTAAATACGAAAAAAAAAAAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAg < 2:81476/141‑1 (MQ=255) cAGTCCTCAACTCTTTTAATGTTTTCATGTTGTCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAg > 1:477487/1‑141 (MQ=255) tCCTCAACTCTTTTAATGTTTTCATGTTGTCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTTTTTATTTTTTTTACATTGATATGCAAATTTCGTATAATaaaaaa > 2:267624/1‑141 (MQ=255) tCCTCAACTCTTTTAATGTTTTCATGTTGTCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGaaa > 1:155718/1‑141 (MQ=255) ccTCAACTCTTTTAATGTTTTCATGTTGTCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTTGTTATAAACTTTACTATGATATGAAAATTTCGTATAATAAGaaaa > 2:675840/1‑141 (MQ=255) ccTCAACTCTTTTAATGTTTTCATGTTGTCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGaaaa > 1:366597/1‑141 (MQ=255) cTCAACTCTTTTAATGTTTTCATGTGGTCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGaaaaa < 1:23822/141‑1 (MQ=255) aaCTCTTTTAATGTTTTCATGTTGTCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAagg < 1:396777/141‑1 (MQ=255) aaCTCTTTTAATGTTTTCATGTTGTCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAagg > 1:329222/1‑141 (MQ=255) aaCTCTGTTAATGTTTTTATGTTCTCACCTCCTTTCTTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAagg < 1:561010/141‑1 (MQ=255) ctctTTTAATGTTTTCATGTTGTCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAaagaag > 1:147721/1‑141 (MQ=255) ctctTTTAATGTTTTCATGTTGTCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAaggag < 1:533711/141‑1 (MQ=255) ctctTTTAATGTTTTCATGTTGTCACCGCCTTTCGTAAACCTAATATAATACGAAATTCTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAaggag > 1:518995/1‑141 (MQ=255) ctTTTAATGTTTTCATGTTGTCACCGCCTTTCGTAAACCTAATATAGTACGAAATTTTCGTATTGTCAACATTAAATACGATTTTTTCGTAAAATTTCTTATCATGATCTAGAAGTTTAGTGTAATAAGAAACTAGGAGgt > 2:385904/1‑141 (MQ=255) ctTTTAATGTTTTCATGTTGTCACCGAATTCCGGAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGgt > 1:284252/1‑141 (MQ=255) ttAATGTTTTCATGTAGACAACGAAATTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAATAAACTTTACTATGATATGAAAATTTATTAAAAAAAAAAAAAAGGAGgtaag < 2:849856/141‑1 (MQ=255) tAATGTTTTAATTTTGTCACCGCCTTTCGTAAACATAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGgtaagt < 2:637807/141‑1 (MQ=255) ttCATGTTGTCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGa < 1:31718/141‑1 (MQ=255) tgttgtCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACaa < 1:233144/141‑1 (MQ=255) gttgtCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACaaa > 2:1124758/1‑141 (MQ=255) ttgtCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATCTGAAAATTTCGTCTAATAAGAAAAAAGGAGGTAAGTGATATGAACacag > 2:288888/1‑141 (MQ=255) ttgtCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACaaag > 2:1072112/1‑141 (MQ=255) tgtCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACaaaga > 2:1027522/1‑141 (MQ=255) aaacgaatttCGTAAACCTAATATAATACGAAATTTTCGGATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAACATTTCGTAAAAAAAAAAAAAAGGAGGTAAGTAATATGAACaaagaaag < 2:372396/134‑1 (MQ=255) aCCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTTTTTATATTTTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAaagcaaga > 2:348430/1‑141 (MQ=255) gCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGAAAGTAATATGAACAAagaaagaact < 2:158445/141‑3 (MQ=255) ccTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAACAAGGAGGGAAGTAATATGAACAAAGAAAGAAata > 1:567269/1‑141 (MQ=255) ccTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAata > 1:1052030/1‑141 (MQ=255) tttCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATTAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAAtatt < 1:1060507/141‑1 (MQ=255) ttCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAAtatta > 1:359886/1‑141 (MQ=255) ttCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAAtatta > 2:812520/1‑141 (MQ=255) ttCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAAtatta > 1:1069017/1‑141 (MQ=255) tAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTCAGTATTATGAACAAAGAAAGAAAtattattat < 1:576814/141‑1 (MQ=255) aCCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGc < 1:260225/141‑1 (MQ=255) ccTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGcc < 2:499323/141‑1 (MQ=255) taatataataCGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTTTTTTTTTTCTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCaa > 2:580923/1‑141 (MQ=255) aatataataCGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCaaa < 1:877939/141‑1 (MQ=255) atataataCGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAATAAACTTTACTAAGAAATGAAAATTTAATAAAATAAGAAAAAAGGAGGTAAGTACTATGAACAAACAAAGAAATAAGACTAAAGCCaaaa > 2:916141/1‑141 (MQ=255) tataataCGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAAtattat < 1:1142162/129‑1 (MQ=255) tataataCGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAAtattat > 2:1142162/1‑129 (MQ=255) aaaaataCGAAATTTTCGGAATGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGAAAAAAAAAAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCaaaaa < 2:442919/138‑1 (MQ=255) ataataCGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAAc > 1:502154/1‑141 (MQ=255) aattCGATATTTCAGGATTGTTAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACAt < 1:447161/141‑1 (MQ=255) ataCGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACAtt < 1:1108282/141‑1 (MQ=255) taCGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAATAAACTTTACTATGATATGAAAATTTTGTATAATAAGAAAACAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTAAATCGAAAACCACTa > 2:345983/1‑141 (MQ=255) aacaaaTCTTCACATTGACAACATTAAAAACGTTTTTATAGTCAAAAACTTTACTATGATATTAAAATTTAAAAAAAAAAAAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAg < 2:685586/138‑1 (MQ=255) aCGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAg < 1:354461/141‑1 (MQ=255) aaTTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGaaaa > 1:1069689/1‑141 (MQ=255) aTTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAAt > 1:788670/1‑141 (MQ=255) ttttCGTATTGTCAACATTAAATACGTTTTTTTTTTTTTTTTTTTTACTATGATATGAAAATTTTGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAACGAAATAAATATTATTATTTCTAAAAACATTAGAAAAtt > 2:578241/1‑141 (MQ=255) tgttCGTATTGGCAACATTAAATACGTAGTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAAtt < 2:1044752/139‑1 (MQ=255) ttCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTtc < 1:989547/141‑1 (MQ=255) tCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTGGAAAATTtcc > 1:129892/1‑140 (MQ=255) cGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTtctc > 1:722402/1‑141 (MQ=255) cGTATTGTCAACATTAAATACGTTTTTTGCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTtctc < 1:832410/141‑1 (MQ=255) tATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCaa < 2:211170/141‑1 (MQ=255) aTTGTCAACATTAAATACGTTTTTTTTTTTTTTTTCTTTACTATGATAGGAAAATTTCGTAAAATAATAAAAAAGGAGGTAAGTAATATGAACAACGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTtctttat > 2:571378/1‑137 (MQ=255) aTTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAAc > 1:62008/1‑141 (MQ=255) aTTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAAc > 1:311158/1‑141 (MQ=255) aTTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAAc < 1:792544/141‑1 (MQ=255) tGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGa < 1:936866/141‑1 (MQ=255) gTCAACATTAAAAACGTTTTTATCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACCAAGAACGAAATATTATTATGGCCACAAACATTAGAAAATTTCTCAACGAt > 1:618960/1‑141 (MQ=255) aaCATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCa < 1:498148/141‑1 (MQ=255) aaCATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCa < 1:372823/141‑1 (MQ=255) tAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAatat < 1:603013/141‑1 (MQ=255) tAAATACATTTTTTTAGTAAAAAACTTTACTATGATATGCAAATTTCGTATAATAAGAAAAAAGGAAGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAatat < 2:567269/141‑1 (MQ=255) atatGTTTTATTAGGAAAAAACTTTACTAGGATATGAAAATTAAAAAAAAAAAAAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGtc < 2:1170416/141‑1 (MQ=255) tACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGtct < 1:811768/141‑1 (MQ=255) gTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACtt < 2:284252/141‑1 (MQ=255) aaaaaaCTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGc > 1:1031592/1‑141 (MQ=255) aaaaaCTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCt < 1:747360/141‑1 (MQ=255) aCTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAAc < 2:895971/141‑1 (MQ=255) tttACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTc > 1:455930/1‑141 (MQ=255) tttACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTc > 2:215313/1‑141 (MQ=255) tttACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTATCAAAAGAAAATTGCTGAACTc > 2:688315/1‑141 (MQ=255) ttACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCa > 2:1103846/1‑141 (MQ=255) ttACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCa > 2:318816/1‑141 (MQ=255) aCTATGATATGAAAATTTCGTATAATAATAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTTTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCAtt < 1:675840/141‑1 (MQ=255) aCTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATCAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCAtt < 2:818496/141‑1 (MQ=255) aCTATGAATTGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCAtt < 1:128498/141‑1 (MQ=255) ataatatgaAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCATTAAc < 2:489917/138‑1 (MQ=255) tatgaAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCATTAACATaa < 1:1124758/141‑1 (MQ=255) gaAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCATTAACATAAAAc > 1:117430/1‑141 (MQ=255) aaaaTTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATTGACAAAGAAAGAAATATTATTATTGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCATTAACATAAAAcc < 1:810552/141‑1 (MQ=255) aaaaTTTCGTATAATAAGAAAAAAGGAGGAAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCATTAACATAAAAca > 2:175438/1‑140 (MQ=255) aaaaTTTCATCTAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCATTAACATAAAAcc < 2:218848/141‑1 (MQ=255) aaaTTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCTAATATGTCTCAAAAGAAACTTGCTGAACTCATTAATATAAAACCa > 2:894657/1‑141 (MQ=255) tCGTAAAAGAACAAAAAAGGAGGTAAATAATATGTACAAAGAAAGAAATATTATTAGAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCATTAACATAAAACCATCtcc < 2:330696/141‑3 (MQ=255) cGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCATTAACATAAAACCATCTACt > 2:39808/1‑141 (MQ=255) cGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCATTAACATAAAACCATCTACt < 2:359886/141‑1 (MQ=255) agTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCATTAACATAAAACCATCTACt < 2:1106388/140‑1 (MQ=255) gTATAATAAGAAAAAGGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACGCATTAACATAAAACCATCTACtt > 1:504295/1‑141 (MQ=255) ataataAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCATTAACATAAAACCATCTACTTTa < 2:1195209/141‑1 (MQ=255) ataataAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCATTAACATAAAACCATCTACTTTa < 1:26703/141‑1 (MQ=255) taataaGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCATTAACATAAAACCATCTAATTTaa > 2:778508/1‑141 (MQ=255) | TAATCAGTCCTCAACTCTTTTAATGTTTTCATGTTGTCACCGCCTTTCGTAAACCTAATATAATACGAAATTTTCGTATTGTCAACATTAAATACGTTTTTTTCGTAAAAAACTTTACTATGATATGAAAATTTCGTATAATAAGAAAAAAGGAGGTAAGTAATATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACTTGCTGAACTCATTAACATAAAACCATCTACTTTAA > USA300TCH1516_ALE/2123709‑2123987 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |