New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1114090 =	73 (0.820)	4 (0.050)	3/246	10.4	6.1%	intergenic (+19/+63)	USA300HOU_RS05510/mntH_1	hypothetical protein/Divalent metal cation transporter MntH
	?	USA300TCH1516_ALE	1114149 =	60 (0.770)					intergenic (+78/+4)	USA300HOU_RS05510/mntH_1	hypothetical protein/Divalent metal cation transporter MntH
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTATTATAGAAAGGTCCCATCAAGTCTTTATTACT  >  USA300TCH1516_ALE/1114012‑1114284                                                                                                                                          |                                                                                                                                        aTTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTAttt                                                                                                                                      >  1:785323/1‑141 (MQ=255) aTTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTAttt                                                                                                                                      <  2:37043/141‑1 (MQ=255)      tAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAAc                                                                                                                                 >  1:569730/1‑141 (MQ=255)       aaaaaaGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAGTTATTAGATGCAACCACAATTTTAATGGTTTTATTTTTAACt                                                                                                                                >  1:246892/1‑141 (MQ=255)             taaTCAGTAGAAACTACACATTATGACGATGAGTATAATCATTCTTAATATGTTCATAGCAAAAGCATAAACATTAAAATGTTAAGTTGTTTATTATTAGATACAACCAACATTTTAATGGTTTTATTGTTAACTTTGTAg                                                                                                                          <  2:572710/140‑1 (MQ=255)                tCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTc                                                                                                                       >  1:354295/1‑141 (MQ=255)                  aaaaGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCtt                                                                                                                     >  1:970532/1‑141 (MQ=255)                        aacaacACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATg                                                                                                               <  1:751740/141‑1 (MQ=255)                           aacaCATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGttt                                                                                                            <  1:879861/141‑1 (MQ=255)                           aacaCATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGttt                                                                                                            >  1:303050/1‑141 (MQ=255)                           aacaCATAAGGACGATGAGTATACTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTGGTTCTTGGAATGttt                                                                                                            >  2:89144/1‑141 (MQ=255)                           aacaCATAAGGACGATGAGTATACTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGttt                                                                                                            >  2:287473/1‑141 (MQ=255)                           aacaCATAAGGAAGATGAGTATACTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGttt                                                                                                            >  2:88944/1‑141 (MQ=255)                            acacATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTg                                                                                                           >  2:540126/1‑141 (MQ=255)                             aacaTAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGa                                                                                                          <  1:760975/140‑1 (MQ=255)                               caTAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAAc                                                                                                        >  1:242926/1‑141 (MQ=255)                                aTAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACg                                                                                                       <  2:785323/141‑1 (MQ=255)                                 tAAGGAAGATGAGTAGATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGa                                                                                                      <  1:292882/141‑1 (MQ=255)                                 aaaGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGa                                                                                                      <  2:169977/140‑1 (MQ=255)                                   aGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTACTGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGAtt                                                                                                    >  1:424677/1‑141 (MQ=255)                                         aTGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAg                                                                                              >  1:245351/1‑141 (MQ=255)                                            aGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACa                                                                                           >  2:745107/1‑141 (MQ=255)                                             gTATAGTGATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACAt                                                                                          <  2:837234/141‑1 (MQ=255)                                              tataATTATCATTAATTTGTTCATAGCAAAAGAAAAACCATTAATATGTCAAGTTGTTAATTAGTAGATACCACCAACCTTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTCGAATGTTTGTACGATTAAATAGACAtt                                                                                         <  2:1041/141‑1 (MQ=255)                                               actgttATGATTAATAGGTTGATAGCAAACGAAAGACCAGTAATTTTGTATGGTGTTAATTATTAGATACTTCCAACACTTTAATGCTTTTATCTTTAACTTTGTTGTTCTTGGAATGTTTGAACGATTAAATAGACAttt                                                                                        <  2:422244/137‑1 (MQ=255)                                                    tATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAAt                                                                                   >  1:746724/1‑141 (MQ=255)                                                     aTCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATa                                                                                  <  1:826802/141‑1 (MQ=255)                                                      tCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATAc                                                                                 >  1:896116/1‑141 (MQ=255)                                                       cATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTATTGTTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAAACATTTaaattcct                                                                                >  1:212611/1‑136 (MQ=255)                                                       cATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACt                                                                                <  1:702244/141‑1 (MQ=255)                                                       cATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACt                                                                                >  1:167333/1‑141 (MQ=255)                                                       cATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCGTGCATTGTCATAACCATTAAATAGACATTTAAAATACt                                                                                <  1:478104/141‑1 (MQ=255)                                                       cATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGCTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACt                                                                                <  1:676376/141‑1 (MQ=255)                                                         ttAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTa                                                                              <  2:803484/141‑1 (MQ=255)                                                          tAATATGTTAAAAACAAAAAAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAg                                                                             <  2:569730/141‑1 (MQ=255)                                                           aaTATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTAGAATGTTTGAGCGATTAAATAGACTATTAAAATACTTAGa                                                                            >  2:521644/1‑141 (MQ=255)                                                              atGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGaata                                                                         <  1:54527/141‑1 (MQ=255)                                                                 ttCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGaataata                                                                      >  1:712483/1‑141 (MQ=255)                                                                    aTAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAGATACTTAGAataataata                                                                   >  1:917148/1‑141 (MQ=255)                                                                       gCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAgt                                                                <  2:169248/141‑1 (MQ=255)                                                                          aaaGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTCATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTc                                                             >  2:159299/1‑141 (MQ=255)                                                                                aaaCCATTTAAATGTTAAGTTGTTAATTATTAGATACAACCACCTTTTTAATGGTTTTATGTTTTACTTTGTTGTTTTTGGAATGTTTGAACGATTAAATTGACATTTAAAATACTAAGAATATTAGTAAGTGTTCATTaa                                                       >  2:353811/1‑141 (MQ=255)                                                                                aaaCCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGaa                                                       >  2:328233/1‑141 (MQ=255)                                                                                aaaCCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGaa                                                       >  2:5463/1‑141 (MQ=255)                                                                                       tAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGatat                                                >  1:134064/1‑141 (MQ=255)                                                                                       tAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGatat                                                <  1:151982/141‑1 (MQ=255)                                                                                        aaaaTGGTAAGTTGTTAATTATTAGATACAACCAATATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATAtt                                               <  1:410641/141‑1 (MQ=255)                                                                                         aaaTGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTa                                              >  1:331862/1‑141 (MQ=255)                                                                                         aaaTGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTa                                              >  1:331651/1‑141 (MQ=255)                                                                                             tttAAGTTGTTAATTATTCGTTACATCCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAAccc                                          <  1:177993/140‑1 (MQ=255)                                                                                              ttAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCa                                         >  2:563019/1‑141 (MQ=255)                                                                                                aaGTTGTGAATCAGTAGATACAACCAACTTTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATg                                       <  2:72448/141‑1 (MQ=255)                                                                                                 aGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGt                                      >  2:886751/1‑141 (MQ=255)                                                                                                      ttAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTttat                                 <  2:394054/141‑1 (MQ=255)                                                                                                            attaGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTATTATAGa                           <  1:986239/141‑1 (MQ=255)                                                                                                            agtaGATTCAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTATTATAGa                           <  2:484820/139‑1 (MQ=255)                                                                                                              taGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTATTATAGaaa                         <  1:5463/141‑1 (MQ=255)                                                                                                                   aCAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTATTATAGAAAGGTcc                    <  1:760188/141‑1 (MQ=255)                                                                                                                    caaccaacATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTATTATAGAAAGGTccc                   <  2:712483/141‑1 (MQ=255)                                                                                                                    caaccaacATTTAAATGGTTTTATTCTTAACTTTGTAGTTCTTGAAGTGATTGAACGCGTAAATTGACTTTTAAAATACTTAGAATAATAATAAGTATCCAGTAAATGACATTAACCCATAGTTTATTGTAGACAgtgtcc                   >  2:895846/1‑136 (MQ=255)                                                                                                                           cATTTTAATTGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTATTATAGAAAGGTCCCATCAAGt            <  1:234676/141‑1 (MQ=255)                                                                                                                           cATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTATTATAGAAAGGTCCCATCAAGt            <  2:746724/141‑1 (MQ=255)                                                                                                                           cATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGCCCATGAAATGATATTAACCCATGTTTTATTATAGAAAGGTCCCATCAAGt            <  1:656328/141‑1 (MQ=255)                                                                                                                           cATTTTAATGGATTTATTTTTAACTTTGTACTGCTTGGAATTTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTATTATAGAAAGGTCCCATCAAGt            <  1:921558/141‑1 (MQ=255)                                                                                                                            aTTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTATTATAGAAAGGTCCCATCAAGTc           >  1:860891/1‑141 (MQ=255)                                                                                                                             ttttAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAAGAAGTGTCCATGAAACGATATTAACCCATGTTTTATTATAGAAAGGTCCCATCAGGTCt          <  1:674554/141‑1 (MQ=255)                                                                                                                              tttAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTATTATAGAAAGGTCCCATCAAGTAtt         >  2:417858/1‑141 (MQ=255)                                                                                                                               ttAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACTGTTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTATCCCATGTTTTATTATAGAAAGGTCCCATCAGGTtttt        >  1:932804/1‑141 (MQ=255)                                                                                                                               ttAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTATTATAGAAAGGTCCCATCAAGTCttt        >  1:88336/1‑141 (MQ=255)                                                                                                                               ttAATGGTTTTATTTTCAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTATTATAGAAAGGTCCCATCAAGTAttt        >  1:586811/1‑141 (MQ=255)                                                                                                                               gtAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTATTATAGAAAGGTCCCATCCAGTCttt        >  2:310229/2‑141 (MQ=255)                                                                                                                                tAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTATTATAGAAAGGTCCCATCAAGTCTtta       <  2:424677/141‑1 (MQ=255)                                                                                                                                     ggtttATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTATTATAGAAAGGTCCCATCAAGTCTTTATTACt  <  2:413489/139‑1 (MQ=255)                                                                                                                                     gTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTATTATAGAAAGGTCCCATCAAGTCTTTATTACt  >  2:18144/1‑141 (MQ=255)                                                                                                                                          |                                                                                                                                        ATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTAAGTTGTTAATTATTAGATACAACCAACATTTTAATGGTTTTATTTTTAACTTTGTAGTTCTTGGAATGTTTGAACGATTAAATAGACATTTAAAATACTTAGAATAATAATAAGTGTCCATGAAATGATATTAACCCATGTTTTATTATAGAAAGGTCCCATCAAGTCTTTATTACT  >  USA300TCH1516_ALE/1114012‑1114284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.