New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	68659 =	76 (0.860)	3 (0.040)	3/242	10.5	4.4%	coding (775/852 nt)	USA300TCH1516_00061	hypothetical protein
	?	USA300TCH1516_ALE	= 68655	63 (0.820)					coding (771/852 nt)	USA300TCH1516_00061	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCT  >  USA300TCH1516_ALE/68523‑68797                                                                                                                                         |                                                                                                                                              agcaaCACCTCCACATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAATTCTGAAACCTTTTACATCAATAATGAGCTTAAACACTCTAAACACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACaataata                                                                                                                                            <  2:251569/137‑1 (MQ=14)  ggAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACaataataa                                                                                                                                           >  1:102439/1‑140 (MQ=255)  ggAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACaataataa                                                                                                                                           >  1:687570/1‑140 (MQ=255)    aaCACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACaataataata                                                                                                                                         >  2:502614/1‑140 (MQ=255)    aaCACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACaataataata                                                                                                                                         >  2:358191/1‑140 (MQ=255)    aaCACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAAACACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACaataataata                                                                                                                                         >  2:209779/1‑140 (MQ=255)            ccGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACaataataataa‑‑‑taataat                                                                                                                              <  1:73717/140‑1 (MQ=255)             cGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACaataataataa‑‑‑taataata                                                                                                                             >  1:236764/1‑140 (MQ=255)               aTAACGCACCGATAGAAATTTTCCATTCCTCACTAAAGACTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTTGAAAAGTACATTAAAAACaataataataa‑‑‑taataataat                                                                                                                           <  2:979944/140‑1 (MQ=17)               aTAACACTCCAATTGCAACTTGCCATTCCGCTCTAAAGTCTTAAACTTTTTACATCAATAATTAGCTTAACCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACaataataataa‑‑‑taataataat                                                                                                                           <  2:771437/140‑1 (MQ=17)                  aCGCCCTGATAGAAAGTTTCTATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGa                                                                                                                        <  1:20397/140‑1 (MQ=255)                      cccGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTc                                                                                                                    <  1:350835/140‑1 (MQ=255)                         gATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTcaac                                                                                                                 >  1:527597/1‑140 (MQ=255)                          agaGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTcaaca                                                                                                                <  1:234043/138‑1 (MQ=255)                          aTAGAATGTTTCCATTCCTCGCTACAGTCTGAAACTTATTACATCAATAATGAGATTAATCACTCTAATCACATTGCAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTcaaca                                                                                                                <  1:384306/140‑1 (MQ=18)                             gAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACaaaa                                                                                                             <  1:171588/140‑1 (MQ=255)                              aaaGTTTCAATTTCTCGGTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAAGCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACaaaaa                                                                                                            <  1:334108/140‑1 (MQ=255)                               aaGTTTCCATTCCTCGATAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAAC‑‑‑AATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAg                                                                                                        <  2:406261/140‑1 (MQ=18)                                     ccATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCt                                                                                                     <  1:794997/140‑1 (MQ=255)                                     ccATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCt                                                                                                     <  1:502614/140‑1 (MQ=255)                                        ttCCTCGCTAAAGTCCGAAACTTATTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACt                                                                                                  <  1:772756/140‑1 (MQ=255)                                        ttCCTCGCCAAACTCTGAAACTTGTTACACCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACt                                                                                                  <  1:334930/140‑1 (MQ=255)                                            tCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAAC‑‑‑AATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATcccc                                                                                           >  1:876471/1‑140 (MQ=255)                                              gCTAATGTCTGTATCTTTTTTCATCAATATTGAGCTTAGTCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATccc                                                                                            <  1:37177/140‑1 (MQ=25)                                              gCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TACTAATAATCGAATTCAACAAAAACTAGGCTACTTATccc                                                                                            <  2:888914/140‑1 (MQ=255)                                              gCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTATGCTACTTATccc                                                                                            <  1:710631/140‑1 (MQ=255)                                              gCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATccc                                                                                            <  1:150042/140‑1 (MQ=255)                                                  aattccgAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAACAATAATAA‑‑‑TAATAATAATCGAACTCAACAAAAACTAGGCTACTTATCCGCTGt                                                                                        <  2:611727/134‑1 (MQ=21)                                                  aattCTGAAACGTATTACACCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGt                                                                                        <  1:927233/137‑1 (MQ=255)                                                  aaGTGTGAAACTTTTTACATCAATGATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCTAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGTCTACTTATCCCCtct                                                                                        <  2:221137/140‑3 (MQ=25)                                                  aaGTCTGAAACTTTTTACATCAATAAGGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGt                                                                                        <  1:149321/140‑1 (MQ=255)                                                     tCTGAAACTGTTTACATCAATAACGAGCTTAATCACTCTAATCATCTTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTaaa                                                                                     <  2:434795/140‑1 (MQ=255)                                                           aCTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACag                                                                               >  2:618871/1‑140 (MQ=255)                                                           aCTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACag                                                                               >  2:641739/1‑140 (MQ=255)                                                               tttACATCAATAATGAGCTTAATCCCTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGaa                                                                           <  1:436682/140‑1 (MQ=255)                                                               tttACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGaa                                                                           <  2:844505/140‑1 (MQ=255)                                                               ttaacaacaATAATGAGCTTAATCACTCTTATCACATCGTAATAGAGCTTGTCGAAAAGGACATAAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGaa                                                                           <  2:667138/137‑1 (MQ=25)                                                                           atGTGCCTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATACCTTCTAAAATACAGAGAATTAATAGCCTAg                                                               <  1:239238/140‑1 (MQ=25)                                                                              aGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGatc                                                            >  1:851350/1‑138 (MQ=255)                                                                              aGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAAc                                                            >  2:484420/1‑140 (MQ=255)                                                                               gCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACa                                                           <  1:151339/140‑1 (MQ=255)                                                                               gCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACa                                                           >  2:749872/1‑140 (MQ=255)                                                                                  tAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATgg                                                        <  2:527597/140‑1 (MQ=255)                                                                                        ctctAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGtttt                                                  <  1:618311/140‑1 (MQ=255)                                                                                         tctAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGttttt                                                 >  2:1005153/1‑140 (MQ=255)                                                                                         tctAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGATGtgttt                                                 >  2:48362/1‑140 (MQ=255)                                                                                          caaaTCAAATTGTAATAGATAATGTCTAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATAAAGAGTCTTCGATGCTGAGAACATGGTGTTTtta                                                <  1:486785/138‑1 (MQ=18)                                                                                               ccaactGTAAAAGCTATTGTCGAAGAGTACATTAAAAACAATAATAATAG‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATGGCCTAGAACATGGTGTTTTTATTAAg                                           <  2:689569/135‑1 (MQ=21)                                                                                               cacaTTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAg                                           <  2:177136/140‑1 (MQ=255)                                                                                               cacaTAGTAATAGATATTGTAGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAg                                           <  1:962176/140‑1 (MQ=255)                                                                                               cacaCTGTAATAGATATTGTCTAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACCAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAg                                           <  2:40849/140‑1 (MQ=255)                                                                                                acaTTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATACTAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTACACGCCAGAGAATTACTCGCCTCGAACATGCGGTTTttcttgcgt                                          >  1:79142/1‑136 (MQ=21)                                                                                                  aTTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTc                                        <  2:39457/140‑1 (MQ=255)                                                                                                  aTTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTc                                        <  1:624328/140‑1 (MQ=255)                                                                                                  aTTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTc                                        <  1:358191/140‑1 (MQ=255)                                                                                                  aTTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTc                                        <  2:326282/140‑1 (MQ=255)                                                                                                     gTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGACTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAAAACAGGGTGTTTTTATTAAGTTCCCg                                     >  1:154888/1‑140 (MQ=255)                                                                                                              atTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAggg                            <  1:661376/140‑1 (MQ=255)                                                                                                               ttGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGt                           >  2:387438/1‑140 (MQ=255)                                                                                                                 gTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTACGTTTCCGTTTTAAGGGTTc                         <  1:749872/140‑1 (MQ=255)                                                                                                                   caaaaaGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAg                       <  2:942382/138‑1 (MQ=255)                                                                                                                   cGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAg                       >  2:114413/1‑140 (MQ=255)                                                                                                                    gAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTGGGATACTTATCGTCATTAAAAGAAAGAGAATTAATGGGCTAGAACAGGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGt                      >  2:184/1‑140 (MQ=18)                                                                                                                    gAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTCAGTTCCAGTTTTAATGGTTCAGt                      >  2:167649/1‑140 (MQ=255)                                                                                                                       aaGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGcc                   <  2:756359/140‑1 (MQ=255)                                                                                                                         caaaaTTAAAAACAATAATAAAAACACTAAGAATAATCGATTACAACAATAACTATGCTACTTATCCCCTCTAAAATACCGAGAATTAATAGCCTAAAACATGGTGTTTTTATTAAGTTACCGTTTTAAGGGCTCAGTGc                    <  2:406060/136‑1 (MQ=255)                                                                                                                           aCATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAg               >  2:334385/1‑140 (MQ=255)                                                                                                                           aCATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTACCGTTTTAAGGGTTCAGTGCCCTAg               >  2:143070/1‑140 (MQ=255)                                                                                                                           aCATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCAACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTACGGGTTCGGTGCCCTAg               >  1:102119/1‑140 (MQ=255)                                                                                                                                  aaaCAATAAAAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATtata        <  2:875756/140‑1 (MQ=255)                                                                                                                                    aCAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAgg      <  1:114413/140‑1 (MQ=255)                                                                                                                                     cAATAATAATAA‑‑‑CAACAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGc     <  2:154888/140‑1 (MQ=255)                                                                                                                                      aataataataa‑‑‑taataataatCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGct    <  2:158245/140‑1 (MQ=255)                                                                                                                                       ataataataa‑‑‑taataataatCGAATTTAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGctc   <  1:264345/140‑1 (MQ=255)                                                                                                                                       ataataataa‑‑‑taataataatCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTATGGGTTCAGTGCCCTAGGATTATATGctc   >  2:730679/1‑140 (MQ=255)                                                                                                                                       ataataataa‑‑‑taataataatCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGctc   <  1:866985/140‑1 (MQ=255)                                                                                                                                       ataataataa‑‑‑taataataaaCGAAGTTAACCAAAACTCGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGctc   <  1:724046/140‑1 (MQ=18)                                                                                                                                        taataataa‑‑‑taataataatCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGctct  <  2:731018/140‑1 (MQ=255)                                                                                                                                         |                                                                                                                                              GGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAA‑‑‑TAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCT  >  USA300TCH1516_ALE/68523‑68797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.