BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	613861 =	122 (1.370)	6 (0.070) +TGAGTCT	3/264	11.2	4.9%	coding (2173/2844 nt)	sdrC	Serine‑aspartate repeat‑containing protein C
*	?	USA300TCH1516_ALE	= 614081	121 (1.360)	6 (0.070) +TGAGTCT	3/264	11.2	4.9%	coding (2393/2844 nt)	sdrC	Serine‑aspartate repeat‑containing protein C
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 127 total aligned reads displayed.

CAAACAGGTACAAATACAACTGAAGATGATAAAGATGCCGATGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGA  >  USA300TCH1516_ALE/613723‑614000

cAAACAGGTACAAATACAACTGAAGATGATAAAGATGCCGATGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGa                                                                                                                                             <  1:144400/140‑1 (MQ=40)

cAAACAGGTACAAATACAACTGAAGATGATAAAGATGCCGATGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGa                                                                                                                                             <  1:669524/140‑1 (MQ=255)

     aGGTACAAATACAACTGAAGATGATAAAGATGCCGATGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCg                                                                                                                                       <  2:348658/140‑1 (MQ=255)

      ggTACAAATACAACTGAAGATGATAAAGATGCCGATGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGa                                                                                                                                      >  2:759678/1‑140 (MQ=255)

      ggTACAAATACAACTGAAGATGATAAAGATGCCGATGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGa                                                                                                                                      <  1:505398/140‑1 (MQ=40)

      ggTACAAATACAACTGAAGATGATAAAGATGCCGATGGTGGCGAAGTTGACGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGGGACTCAGATTCTGACA‑GCGa                                                                                                                                      >  2:83585/1‑140 (MQ=21)

        tACAAGTACAACGGAAGATGATAAAGATGCCGATGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGAtt                                                                                                                                    <  2:32541/140‑1 (MQ=255)

             aTACAACTGAAGATGATAAAGATGCCGATGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGAc                                                                                                                               >  1:652400/1‑140 (MQ=255)

                  aCTGAAGATGATAAAGATGCCGATGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACtcaca                                                                                                                          >  2:129216/1‑138 (MQ=255)

                        gatgatAAAGATGCCGATGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACtcagataacga                                                                                                                    >  2:170648/1‑140 (MQ=255)

                        gatgatAAAGATGCCGATGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTAATACGAAGAAGATACAGCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACtcagatagcga                                                                                                                    >  2:209860/1‑140 (MQ=255)

                        gatgatAAAGATGCCGATGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCAAACTTGATAATGGCTACTACGAAGGAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACtccgatagcga                                                                                                                    >  2:605252/1‑140 (MQ=255)

                        gaggatAAAGATGCCGATGGTGGCGAAGTTGATGTAACAATTACGGATCATGCTGAATTCACACTTGATAATGGCTACTAGGAAAAAGAAACAACAGAGACGCACTCAGATTCTGACA‑GCGATTCATACtcagatagcga                                                                                                                    >  2:456628/4‑140 (MQ=17)

                         atgatAAAGATGCCGATGGTGTCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACtcagatagcgac                                                                                                                   <  2:726577/140‑1 (MQ=255)

                          tgatAAAGATGCCGATGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACtcagctaccgact                                                                                                                  >  1:134298/1‑140 (MQ=255)

                          tgatAAAGATGCCGATGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACtcagatagcaact                                                                                                                  >  1:205975/1‑140 (MQ=255)

                              aaaGATGCCGATGGTGGCGAGGTTGATGTAACAATTACGGATCATGATGATTACACACATGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACtcagatagcgactcaga                                                                                                              >  1:612333/1‑140 (MQ=255)

                                aGATGCCGATGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACtcagatagcgactcagatt                                                                                                            >  2:669608/1‑140 (MQ=255)

                                 gATGCCGATGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACtcagatagcgactcagattc                                                                                                           >  1:362718/1‑140 (MQ=255)

                                       gATGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACtcagatagcgactcagattcagatag                                                                                                     >  1:254543/1‑140 (MQ=255)

                                        aTGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACtcagatagcgactcagattcagatagc                                                                                                    >  2:909003/1‑140 (MQ=255)

                                        aTGGCGGAGAAGTTGATGTAACAATTACGGATCAATATAAGTTTACACTAGATAATGGCTACTACTATGAAGAAACATCAGATAGCGACTCAGATTCAGACT‑GCGATTCAGACtcatatagcgtctcatattcagatagc                                                                                                    <  2:328961/140‑1 (MQ=17)

                                         tggtggCGAAGCTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATCGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGCTTCTGACA‑GCGATTCAGACcccgatagcgacacagattcaagtagcg                                                                                                   >  2:283319/1‑140 (MQ=17)

                                           gtggCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTTATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACtcagatagcgactcagattcagatagcgac                                                                                                 <  1:249292/140‑1 (MQ=255)

                                           gtggCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACtcagatagcgactcagattcagatagcgac                                                                                                 >  1:530571/1‑140 (MQ=255)

                                            tggCGAAGTTGATGGAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACtcagatagcgactcagattcagatagcgact                                                                                                <  1:623866/140‑1 (MQ=255)

                                                 aaGGTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACtcagatagcgactcagattcagatagcgactcagat                                                                                           <  1:989087/140‑1 (MQ=255)

                                                    tggATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAgatagcgactcagattcagatagcgactcagattca                                                                                        <  2:489244/138‑1 (MQ=255)

                                                       aTGGAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAgattcagac                                                                                     <  1:638838/140‑1 (MQ=255)

                                                        tGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAgattcagaca                                                                                    >  2:792160/1‑140 (MQ=255)

                                                           aaCAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCCGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAgattcagacagcg                                                                                 <  1:783851/140‑1 (MQ=255)

                                                                  aCGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAgattcagacagcgattcaga                                                                          <  1:789977/140‑1 (MQ=255)

                                                                   cGGATCATGAGGATGTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAgattcagacagcgattcagac                                                                         <  1:972659/140‑1 (MQ=255)

                                                                          tgatgaTTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCgact                                                                  <  1:920915/140‑1 (MQ=255)

                                                                          tgatgaTTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCgact                                                                  >  1:540564/1‑140 (MQ=255)

                                                                           gatgatTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCgactc                                                                 >  1:249435/1‑140 (MQ=255)

                                                                            atgatTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCgactca                                                                >  1:915854/1‑140 (MQ=255)

                                                                            atgatTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATACCGCCTCAGCTTCAGCCAGCGATGCAGACAGCgactca                                                                >  1:180547/1‑140 (MQ=21)

                                                                            atgatTTCACACTTGATAACGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCgactca                                                                >  1:531588/1‑140 (MQ=255)

                                                                              gatTTCACACTTGATAAAGGCAGCTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCgactcaga                                                              >  1:241071/1‑140 (MQ=255)

                                                                                tttCACTCTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCGGACA‑GCGATGCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCgactcagact                                                            <  1:122669/140‑1 (MQ=255)

                                                                                tttCACACTTGAGAATGACTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCgactcagact                                                            <  1:378394/140‑1 (MQ=255)

                                                                                  tCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCgactcagactca                                                          >  1:353596/1‑140 (MQ=255)

                                                                                  tCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACACCgacccagactcc                                                          >  1:398789/1‑139 (MQ=255)

                                                                                   cacaCTGGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGactcagactcag                                                         <  1:213728/140‑1 (MQ=255)

                                                                                    acacTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGCCTCAGATTCAGACAGCGATTCAGACAGCGActcagactcaga                                                        >  1:464612/1‑140 (MQ=255)

                                                                                    acacTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGActcagactcaga                                                        <  1:922068/140‑1 (MQ=255)

                                                                                    acacTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATCCAGATAGCGCCTCGGACTCAGACAGCGAGTCAGACAGAGActcagactcaga                                                        >  1:296817/1‑140 (MQ=21)

                                                                                       cTTGATAGTGGCTACTACGAAGAAGAAACATCAGATAGCGCCTCTGATTCTGACA‑GCGATTCAGACTCAGATCGCGACACCGATTCAGAGAGCGACTCAGAATCAGAAAGCGAATCAGCCAGCGACTGAGACACAGATaa                                                     >  2:709719/1‑139 (MQ=21)

                                                                                       cTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAg                                                     >  1:76266/1‑140 (MQ=255)

                                                                                         tGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACACGTGATT‑AGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCg                                                   <  1:476166/140‑1 (MQ=37)

                                                                                         tGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGCTTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCg                                                   >  1:935184/1‑140 (MQ=255)

                                                                                         tGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCg                                                   <  1:397283/140‑1 (MQ=255)

                                                                                         tGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCg                                                   <  1:397279/140‑1 (MQ=255)

                                                                                           aTAATGGCTACTCCGAAGAAGAAACATCAGATAGCGACTCAGATTCGGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCgat                                                 <  2:375937/140‑1 (MQ=255)

                                                                                           aTAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCgat                                                 <  1:659749/140‑1 (MQ=255)

                                                                                           aTAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCgat                                                 <  1:576979/140‑1 (MQ=255)

                                                                                            tAATGGCTACTACGAAGAGGAAACAGCAGATAGGGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCgatt                                                <  2:662453/140‑1 (MQ=255)

                                                                                            tAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATACCGACTCAGATTCAGACAGCGATCCAGACAGCGACTCAGACTCAGATAGCgatt                                                <  2:612333/140‑1 (MQ=255)

                                                                                              aTGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCgattca                                              <  1:547564/140‑1 (MQ=255)

                                                                                              aTGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACCCAGATAGCgattca                                              >  1:870897/1‑140 (MQ=255)

                                                                                               tGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCgattcag                                             >  1:45953/1‑140 (MQ=255)

                                                                                                   tactacGAAGAAGAAACATCAGATTGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCgattcggatca                                         <  2:506613/140‑3 (MQ=255)

                                                                                                    actacGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCgattcagattca                                        <  1:967285/140‑1 (MQ=255)

                                                                                                     ctacGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGattcagattcag                                       >  2:571013/1‑140 (MQ=255)

                                                                                                        cGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACa                                    >  1:660423/1‑140 (MQ=255)

                                                                                                            gaagaaACATCAGATAGCGACTCAGATTCTGACG‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCga                                <  1:801061/140‑1 (MQ=255)

                                                                                                            caaaaaaCACCAGATAGCGCCTCAGAATCTGACA‑GCGATTCAGACTCAGAGAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGCTTCAGACAGCga                                <  1:71154/136‑1 (MQ=21)

                                                                                                                 aaCATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGATTCAGACTCAGATAGCGATTCAGCTTCAGCCAGCgccgccg                           >  1:330738/1‑134 (MQ=21)

                                                                                                                  aCATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGCCTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCTGTAGGCGGTTCAGATTCAGACAGCgactacga                          >  1:452911/1‑136 (MQ=21)

                                                                                                                  aCATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACGCAGACTCAGATAGCGGTAAGGATTCAGACAAAgactcaga                          >  2:911657/1‑140 (MQ=21)

                                                                                                                  aCAGCAGATAGGGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCCGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCgcctcaga                          <  2:555661/140‑1 (MQ=255)

                                                                                                                   cATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCgactcagac                         >  1:773755/1‑140 (MQ=255)

                                                                                                                      cAGATTGCGACCCAGATCCTGACA‑GCGACGCAGCCTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCgactcagactca                      <  2:471463/140‑1 (MQ=21)

                                                                                                                      cAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCgactcagactca                      <  2:430143/140‑1 (MQ=255)

                                                                                                                         aTAGCGACTTAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACCGTGACCGATTCGCAGATTGCGATTCAGATTCAGACAGCGACtcagactcggac                   >  1:572770/1‑140 (MQ=18)

                                                                                                                         aTAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACtcagactcagac                   >  1:117339/1‑140 (MQ=255)

                                                                                                                          tAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACGTCGACTCAGACTCAGACa                  >  1:248565/1‑140 (MQ=255)

                                                                                                                          tAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACCCAGACa                  >  2:732765/1‑140 (MQ=255)

                                                                                                                           aGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAAATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGActcagactcagaacg                 >  2:238228/1‑137 (MQ=255)

                                                                                                                           aGCGACTCAGATCCTGCCA‑GCGCTCCAGACTCAGACAGCGACTCAGATCCAGATAGCGACTCAGATCCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAg                 <  1:274434/140‑1 (MQ=18)

                                                                                                                            gCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGc                >  1:880488/1‑140 (MQ=255)

                                                                                                                            gCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACAGCGACTCAGAATCAGATAGGGATTCAGATTCAGACAGCGACTCGGACCCAGACAGc                >  2:785243/1‑140 (MQ=21)

                                                                                                                            gCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATCCAGACAGCGATTCAGACCGCGACTCAGACTCAGATCGCGATACGAATTCAGACAGCGacacacacacaggcccg                >  2:308825/1‑135 (MQ=18)

                                                                                                                             cGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCg               >  1:159364/1‑140 (MQ=255)

                                                                                                                              gACTCAGATTCTGACA‑GCGATTCAGTCTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACCGCGACTCAGACTCAGATAACGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGa              <  1:614324/140‑1 (MQ=255)

                                                                                                                              gACTCAGATTCTGACA‑GCGATTCAGCCTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGa              <  2:241071/140‑1 (MQ=255)

                                                                                                                               aCTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGAt             <  1:855457/140‑1 (MQ=255)

                                                                                                                                 tCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTc           <  1:363106/140‑1 (MQ=255)

                                                                                                                                 tCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGAGACTCAGACTCAGACAGCGGATCCGATTGAAACAGAGACGCATACTCAAACAGGGACTc           >  2:484097/1‑140 (MQ=18)

                                                                                                                                     aTTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTGAGATAGCGACTCAGATTCAGACGGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGGTTGAGAc       >  2:393033/1‑140 (MQ=255)

                                                                                                                                     aTTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGGGTCAGACGGCGAGTAAGGCACAGATGGCGATCCAGGTGCAGACAGCGACGGAGGCGCGGACAGCGAACCAGAc       >  2:661184/1‑140 (MQ=12)

                                                                                                                                     aTTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTGAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGAc       >  2:70180/1‑140 (MQ=255)

                                                                                                                                     aTTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACACCGACAGCGACTCAGACAGCGGATGAGATTCAGACAGCGACTCAGACTCAGACAACGATTCAGAc       >  2:886139/1‑140 (MQ=18)

                                                                                                                                       tcggACA‑TCGATTCAGAATCAGATAGCGACTCAGAGTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTc     <  2:463662/137‑1 (MQ=255)

                                                                                                                                       tcggACA‑GCGATTCAGGCTGCGATCGGGACTCGGATGCCGGTGGCGACTCAGATTCAGACAGCGATTCAGACCGCCGCTTACACGCAGATAGCGATTCAGATTCAGACCGCGACTCAGACTCAGACAGCGATTCAGACTc     <  2:407801/137‑1 (MQ=16)

                                                                                                                                       tCTGACG‑GCGATTCAGACTCAGATAGCGACGCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTc     <  2:110298/140‑1 (MQ=255)

                                                                                                                                        cTGACA‑GCGATTCAGACTCAGAAAGCGACTCAGATTCAGATAGCTACTCAGACTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACCCAGACAGCGATTCAGACTCg    <  1:705643/140‑1 (MQ=255)

                                                                                                                                          gACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGa  <  1:975549/140‑1 (MQ=255)

                                                                                                                                          gACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACGGCGACACAGACTCAGACGGAGATTCAGAGTCGGACGCCGACTCAGACGCAGACACAGATTCAGACTCGGa  >  2:217091/1‑140 (MQ=18)

CAAACAGGTACAAATACAACTGAAGATGATAAAGATGCCGATGGTGGCGAAGTTGATGTAACAATTACGGATCATGATGATTTCACACTTGATAATGGCTACTACGAAGAAGAAACATCAGATAGCGACTCAGATTCTGACA‑GCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGA  >  USA300TCH1516_ALE/613723‑614000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.