| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,440,085 | G→T | intergenic (‑45/+126) | cspA_2 ← / ← USA300TCH1516_01338 | Cold shock protein CspA/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,440,085 | 0 | G | T | 94.3% | 201.4 / ‑3.8 | 72 | intergenic (‑45/+126) | cspA_2/USA300TCH1516_01338 | Cold shock protein CspA/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/1); major base T (39/27); minor base A (0/4); total (40/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.43e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAAAAATGTACGAATACGTCATTTTCTCCTTCAACTTCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCGCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGTTATTACCAAATTGCAATACAATAATAAAAAATATTCATTTAATCAATTA > USA300TCH1516_ALE/1439949‑1440221 | gAAAAATGTACGAATACGTCATTTTCTCCTTCAACTTCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCat > 2:370480/1‑140 (MQ=255)gAAAAATGTACGAATACGTCATTTTCTCCTTCAACTTCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATACTTATTCTCat > 1:662468/1‑140 (MQ=255) aaaaTGTACGAATACGTCATTTTCTCCTTCAACTTCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCatat < 2:317558/140‑1 (MQ=255) aaTGTACGAATACGTCATTTTCTCCTTCAACTTCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTa < 1:787444/140‑1 (MQ=255) tGTACGAATACGTCCTTTTCTCCTTCAAATCTGAAAGAGCCGAATCCTTTTGCAGCGTTAAACCATTTAACTGTAACTTGTTTCATAATCAGAAACCACCAAGACTAAAATTCATTCAATATACTTATTGTCATATTaaa > 2:416029/1‑138 (MQ=255) gTACGAATACGTCATTTTCTCCTTCAACTTCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTTCac > 1:896015/1‑139 (MQ=255) gTACGAATACGTCATTTTCTCCTTCAACTTCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACaa > 1:896234/1‑140 (MQ=255) gTACGAATACGTCATTTTCTCCTTCAACTTCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACaa > 1:870072/1‑140 (MQ=255) cGAATACGTCATTTTCTCCTTCAACTTCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACaaaaa < 1:322067/140‑1 (MQ=255) cGTCATTTTCTCCTTCAACTTCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTATAAAAAATACAt < 2:312840/140‑1 (MQ=255) cGTCATTTTCTCCTTCAACTTCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACAt < 1:951246/140‑1 (MQ=255) gTCATTTTCTCCTTCAACTTCGCTAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTAAATATGCTTATTCTCATATTACAAAAAATACATg < 2:766476/140‑1 (MQ=255) cATTTTCTCCTTCAACTTCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCa > 1:54506/1‑140 (MQ=255) cATTTTCTCCTTCAACTTCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTATACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCa > 2:77219/1‑140 (MQ=255) aTTTTCTCCTTCAACTTCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCaa > 1:594310/1‑140 (MQ=255) ttCTCCTTCAACTTCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAATACTAAAATTCATTCAATATGCTTATTCAAAAATAAAAAAAAATACATGCAAAtt < 2:142923/140‑1 (MQ=255) ttCTCCTTCAACTTCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAAtt < 1:107826/140‑1 (MQ=255) aaCTTCGATTAGGCCGAATCCTTTTTCAGCGTGAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACTTGCAAATTTCACTCaaa < 2:561293/140‑1 (MQ=255) aCTTCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAat < 2:264667/140‑1 (MQ=255) ttCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAatat < 2:972761/140‑1 (MQ=255) cGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTc > 1:827195/1‑140 (MQ=255) cGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGAATAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATAttt > 2:108172/1‑139 (MQ=255) cGATAAAGCCGAATCCTTTTTCAGCGTTAAAACATTTAACAGGACAATATGTCATAATCTGAAACCTCCAGGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAATAACACGCAAATTTCACTCAAATATTc > 1:591415/1‑140 (MQ=255) aaaGTCAAATCTTTTTTCAACGTTAAAACATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATAAAAAAAAAAAAAAAAATACATGCAAATTTCACTCAAATATTCTTTg < 2:233843/140‑1 (MQ=255) aGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCa < 1:973412/140‑1 (MQ=255) gCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCACGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTATTTGCaa > 1:16376/1‑140 (MQ=255) tcTTTTCCATCCTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCAAAGACTAACATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCCAACTTCACTCAAATATTCTTTGCAATATGGaa < 2:258086/139‑1 (MQ=255) ttttCAGCGTTAAACCTTTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGaataa > 1:500644/1‑140 (MQ=255) ttCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTCCAAAAAATACATGCAAATTTCACTCAAATATTCTTTACAATATGGAATAatc > 1:490818/1‑140 (MQ=255) tCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAatca > 1:6062/1‑140 (MQ=255) gTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATACTCATCTGc > 1:769325/1‑140 (MQ=255) gTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAAGTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGc > 2:936528/1‑140 (MQ=255) ttAAACCATTTAACTGTACCTTGTTTCATAATCTTAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCt < 2:133137/140‑1 (MQ=255) ttAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCt < 2:256586/140‑1 (MQ=255) ttAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCt < 2:299364/140‑1 (MQ=255) aCCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGAATAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTacc > 1:193708/1‑138 (MQ=255) cATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACtt > 1:32942/1‑140 (MQ=255) tttAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAATTTGt < 1:683940/140‑1 (MQ=255) tGTACCTTGTTTCATTATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATtata < 1:809354/140‑1 (MQ=255) ccTTGCTTCATAATCTGCATCTTCCCAGAATAGAATTCAGCCGATATGCGTATTCTCATATTATAAAAAATACATGTAAATTTCACTCAGATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGc < 2:972512/140‑1 (MQ=255) ttGTTTCATAATCTTAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATATGATTAACTTGTATTATAGTGCaa > 2:682900/1‑139 (MQ=255) ttGTTTCATAATCTGAAACCTCCAAGCCTAAAATTCATTCAATATGATTCTTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAAACATCTGCTTAACTTGTATTATAGTGCaa > 2:208952/1‑139 (MQ=255) ttGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAg > 1:878662/1‑140 (MQ=255) tGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATCTTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGATTAACTTGTATTATTGTGCAGt > 2:283604/1‑140 (MQ=255) tGTATCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTGGTATTACAGTGctga > 2:944767/1‑137 (MQ=255) tttCATAATCTGAAACCTCCCAGAATAAAATTCATTCAATATGCTTATTCTCAGATTACAAAAAATACATGAAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGAAGtta > 2:418412/1‑140 (MQ=255) ttCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTTCGTTGTATTTTAGTGCTGttat > 1:97396/1‑140 (MQ=255) caaaaTCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATCTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGttatta < 2:376702/137‑1 (MQ=255) cATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGttatta < 2:988030/140‑1 (MQ=255) aaaaTCTTAAACCCCCACTACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCATAACTTCTATTATAGTGCAGTTATTAc < 2:714531/138‑1 (MQ=255) aTAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGttattcc < 2:560801/140‑3 (MQ=255) gaTCTGAAACCTCCAAGACTAAAATTCATTCAATATTCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCTAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGGCGTTATTACCa < 2:614762/139‑1 (MQ=255) aaTCTGAAACCTCCAAGACTAAAATTCATTCAATATGTTTATTCTCATATTACAACAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTACTTAACTTGTATTATATTGAAGttattgaca > 2:508439/1‑136 (MQ=255) aaTCTGAAACCTCCAAGAATAAAATTCAGTCACTATGCTTATTCAAATATTAAAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGTTATTACCa < 2:18542/140‑1 (MQ=255) tCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCCCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGTTATTACCaaa > 2:693756/1‑140 (MQ=255) cTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGTTATTACCAAAt > 1:799169/1‑140 (MQ=255) aaaCCTCCAGGACTAAAATTCATTCAATATGCTTATTTTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAGTATGGAATAATCATTTGCTTAACTTGTATTATAGTGCAGTTATTACCAATTTGc > 2:983166/1‑140 (MQ=255) aaaCCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGTTATTACCAAATTGc > 1:689749/1‑140 (MQ=255) aaaCCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGTTATTACCAAATTGc > 1:540017/1‑140 (MQ=255) aCCTCCAAGACTAAAATTCATTCAATATGCTTATTCTCATCTTACAAAAAATACGTGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGTTATTACCAAATTGcaa > 2:332463/1‑140 (MQ=255) ccAAGACTAAAATTCCTTCCATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGTTATTACCAAATTGcaataca > 2:113965/1‑140 (MQ=255) acAAGAAAAAAATTCATACCATCTGATAAGTATCATATGACAAAGAAAACACGCAAATATCACTCAAATATGCTGTGCAGTATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGTTATTACCAAATTGcaataca > 2:839982/2‑140 (MQ=255) aaGACTAAAATTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGTTATTACCAAATTGcaatacaat < 1:488198/140‑1 (MQ=255) aaTTCATTCAATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGTTATTACCAAATTGCAATACAATAATaaaaa > 1:135423/1‑140 (MQ=255) tcattcaATATGCTTATTCTCATATTACAAAAAATATAGGTAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGTTATTACCAACTTGCAATACAATAATAAAAAata > 1:992436/1‑140 (MQ=255) attcaATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGTTATTACCAAATTGCAATACAATAATAAAAAATAtt < 1:711112/140‑1 (MQ=255) ttcaATATGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGTTATTACCAAATTGAAATACAATAATAAAAAATATTc > 1:886670/1‑140 (MQ=255) tatGCTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGTTATTACCAAATTGCAATACAATAATAAAAAATATTCATTTa < 1:508448/140‑1 (MQ=255) tGCTTATTCTCATATTACCAAAAATACATGCAAATTTCACTCACATATTCTTTTCAATATGGAATAATCATCTGCTTACGTTGTATTATAGTGCAGTTTTTCCCACATTGCCATACAATAATAAAAACAATTCATTTGAt > 2:886253/1‑140 (MQ=255) cTTATTCTCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCACCATCGCCCAAGCAGCTGCTTAACTTGTATTATAGTGCAGTTATTACCAAATTGCAATACAATAATAAAAAATATTCATTTAATCa < 1:730938/140‑1 (MQ=255) ttATTCGCATATTACAAAAAATACATGCCAATTTCCCTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGTTATTACCAAATTGCAATACAATAATAAAAAATATTCATTTAATCaa < 1:416029/140‑1 (MQ=255) ttCACATATTACAAATAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGTTATTACCAAATTGCAATACAATAATAAAAAATATTCATTTAATCAatta < 2:594310/140‑1 (MQ=255) | GAAAAATGTACGAATACGTCATTTTCTCCTTCAACTTCGATAAAGCCGAATCCTTTTTCAGCGTTAAACCATTTAACTGTACCTTGTTTCATAATCTGAAACCTCCAAGACTAAAATTCATTCAATATGCTTATTCGCATATTACAAAAAATACATGCAAATTTCACTCAAATATTCTTTGCAATATGGAATAATCATCTGCTTAACTTGTATTATAGTGCAGTTATTACCAAATTGCAATACAATAATAAAAAATATTCATTTAATCAATTA > USA300TCH1516_ALE/1439949‑1440221 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |