BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 1982	842 (0.980)	5 (0.010)	4/246	NT	0.62%	intergenic (+215/+111)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
*	?	NC_012417	= 2027	813 (1.010)	5 (0.010)	4/246	NT	0.62%	intergenic (+260/+66)	USA300HOU_RS14895/USA300HOU_RS14900	hypothetical protein/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1009 total aligned reads displayed.

TTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTG  >  NC_012417/1842‑2122

    tttttGTTTTTCTATGAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGa                                                                                                                                          >  2:638880/1‑141 (MQ=255)

    tttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGa                                                                                                                                          >  1:534917/1‑141 (MQ=255)

    tttttGTTTTTCTAAAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGa                                                                                                                                          <  1:317376/141‑1 (MQ=255)

     ttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAGGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGAc                                                                                                                                         >  1:285786/1‑141 (MQ=255)

     ttttGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGAc                                                                                                                                         >  2:246506/1‑141 (MQ=255)

        tGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGaa                                                                                                                                      <  1:34461/141‑1 (MQ=255)

           ttttCTATAAAGATGGTGCTTTTGAAGAGATGGAAGAAAAATATGATTATACTGAAGTTTATAAAAAATCGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGt                                                                                                                                   >  1:717425/1‑141 (MQ=25)

            tttCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTc                                                                                                                                  >  2:120724/1‑141 (MQ=255)

              tCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCgg                                                                                                                                >  1:733628/1‑141 (MQ=255)

                 ataAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTTATGTAGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATCTCGGCAt                                                                                                                             >  1:664316/1‑141 (MQ=255)

                 ataAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCAt                                                                                                                             <  2:623061/141‑1 (MQ=255)

                      gatgatGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCgg                                                                                                                        >  1:632382/1‑140 (MQ=255)

                        tgatgGTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGa                                                                                                                      <  1:439801/141‑1 (MQ=255)

                            gCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                                                                  >  2:371087/1‑141 (MQ=255)

                            gCTTTTGAAGAAATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTa                                                                                                                  <  1:16994/141‑1 (MQ=255)

                             cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                                                                 <  2:592350/141‑1 (MQ=255)

                             cTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                                                                 <  1:764130/141‑1 (MQ=255)

                             cTTTCGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAt                                                                                                                 >  2:390638/1‑141 (MQ=255)

                              ttttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAtt                                                                                                                >  2:573713/1‑141 (MQ=255)

                              ttttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTGATTGATGTTGAGAAGAAGCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTAtt                                                                                                                >  1:519589/1‑141 (MQ=255)

                               tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTa                                                                                                               >  1:507380/1‑141 (MQ=255)

                               tttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTa                                                                                                               >  2:447375/1‑141 (MQ=255)

                                ttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTaa                                                                                                              >  1:576118/1‑141 (MQ=255)

                                ttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTaa                                                                                                              >  2:529064/1‑141 (MQ=255)

                                ttGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTaa                                                                                                              <  2:215669/141‑1 (MQ=255)

                                 tGACGAGATGGAAGAAAAATAAGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAg                                                                                                             <  1:139278/141‑1 (MQ=255)

                                       gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAcc                                                                                                       >  2:515899/1‑141 (MQ=255)

                                       gaTGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAcc                                                                                                       >  2:178969/1‑141 (MQ=255)

                                       aattgaagaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGAcc                                                                                                       <  1:72224/137‑1 (MQ=255)

                                         tGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCGTTTATGCCGAGAACATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAAATTGCAGACGAATGTCGGCATAACGTGAGCTATTAAGCCAAcact                                                                                                     >  2:77209/1‑138 (MQ=21)

                                           gatgaaAATTATGATTATAATGAAGATGATAAAAAATAGACGTCGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGACCCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTc                                                                                                   <  1:224151/138‑1 (MQ=17)

                                            aagaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCGATTAAGCCGACCATTCg                                                                                                  >  2:719058/1‑141 (MQ=255)

                                             agaaAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGa                                                                                                 <  2:158219/141‑1 (MQ=255)

                                                     atGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGCGCTATTAACCCGGCCATTCGACAAGtttt                                                                                         <  2:166126/141‑1 (MQ=255)

                                                       gATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTCTTAAGCCGACCATCCGACAAGGTTTgg                                                                                       >  2:433184/1‑141 (MQ=255)

                                                        aTTATAATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTggg                                                                                      <  1:70384/141‑1 (MQ=255)

                                                          tATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGAt                                                                                    >  1:495795/1‑141 (MQ=255)

                                                             cATGAAGATAATAAAATATGGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACTCTTAAC‑‑T‑‑‑‑AAACTTTCAGACGAGTGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGt                                                                                 <  1:409367/141‑1 (MQ=14)

                                                              aTGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGtt                                                                                >  2:135724/1‑141 (MQ=255)

                                                               agAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTa                                                                               <  1:203047/140‑1 (MQ=255)

                                                                gAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAACAATCCCAAAACTTGtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaa                                                                                    <  1:380327‑M1/141‑59 (MQ=255)

                                                                 aaGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAGGTTTTGGGATTGTTAAg                                                                             >  1:179986/1‑141 (MQ=255)

                                                                    ataataAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGt                                                                          <  1:584802/141‑1 (MQ=255)

                                                                      aataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTc                                                                        >  1:278269/1‑141 (MQ=255)

                                                                       ataaAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTcc                                                                       <  1:119643/141‑1 (MQ=255)

                                                                          aaaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAg                                                                    <  2:414954/141‑1 (MQ=40)

                                                                           aaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatc                                                                   <  1:250396‑M1/141‑76 (MQ=255)

                                                                           aaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTAGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAgg                                                                   <  2:553527/141‑1 (MQ=255)

                                                                           aaaaTAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑C‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGacg                                                                   <  1:418452/141‑3 (MQ=255)

                                                                               tAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCa                                                               <  2:11187/141‑1 (MQ=38)

                                                                                   cgacgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGt                                                           >  1:428702/1‑141 (MQ=33)

                                                                                      cgCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCaa                                                        >  1:454196/1‑141 (MQ=32)

                                                                                       gCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAAt                                                       <  2:259358/141‑1 (MQ=32)

                                                                                         aTTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaa                                                     <  1:152924/141‑1 (MQ=32)

                                                                                          tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGCCGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaaa                                                    >  2:500957/1‑141 (MQ=17)

                                                                                          tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaaa                                                    <  2:689823/141‑1 (MQ=32)

                                                                                          tttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGACATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCCCAACGTCAATaaa                                                    >  1:309478/1‑141 (MQ=17)

                                                                                          tttATGCCGAGAAAATTTATTCATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGACTGTTAACCGTTCCGAGGCTCAACGTCAATaaa                                                    >  2:535664/1‑141 (MQ=255)

                                                                                           ttATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAg                                                   >  1:244739/1‑141 (MQ=32)

                                                                                            tATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACACGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATaaacc                                                  >  1:61955/1‑139 (MQ=17)

                                                                                            tATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGc                                                  >  2:674688/1‑141 (MQ=32)

                                                                                               gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAt                                               <  1:390638/141‑1 (MQ=32)

                                                                                               gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAt                                               <  2:358694/141‑1 (MQ=32)

                                                                                               gCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAAt                                               <  2:285786/141‑1 (MQ=32)

                                                                                                 cGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTTAGAGGTTCAACGTCAATAAAGCAATTg                                             <  1:564421/141‑1 (MQ=12)

                                                                                                 cGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTg                                             <  2:740266/141‑1 (MQ=32)

                                                                                                 cGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTg                                             <  1:370420/141‑1 (MQ=32)

                                                                                                  gagaAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCCAGGCTCAACGTCAATAAAGCAATTgg                                            >  1:469370/1‑141 (MQ=17)

                                                                                                   agaAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGa                                           >  2:338288/1‑141 (MQ=31)

                                                                                                           tATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGGTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAg                                   >  2:187011/1‑141 (MQ=17)

                                                                                                            aTTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGt                                  >  1:352469/1‑141 (MQ=32)

                                                                                                             ttGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTa                                 >  1:292978/1‑141 (MQ=33)

                                                                                                              tGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTAt                                >  2:204752/1‑141 (MQ=34)

                                                                                                               gctGTTGACGACAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATc                               <  2:345347/139‑1 (MQ=255)

                                                                                                               gATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATc                               <  2:103395/141‑1 (MQ=35)

                                                                                                                aTGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGCGAATCAACGACCAGAAAGCAATTGGAATAAATAGTATCt                              >  1:398332/1‑141 (MQ=11)

                                                                                                                aTGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCt                              >  1:79101/1‑141 (MQ=35)

                                                                                                                 tGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTa                             <  1:597572/141‑1 (MQ=37)

                                                                                                                    tGAGAACAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAg                          >  2:483547/1‑141 (MQ=255)

                                                                                                                     gagaAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCTTACCGTAAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGt                         <  1:210532/141‑1 (MQ=255)

                                                                                                                      agaagaACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGTCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAAGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTa                        >  2:327693/1‑141 (MQ=255)

                                                                                                                        aagaaCCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTTAc                      >  1:608004/1‑141 (MQ=255)

                                                                                                                         agaaACCTTAAC‑‑G‑‑‑‑AAACTTTCAGACGAACTTCGGCATAGCGTTATCTATTAAGCCGACCATTTGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTACCGTAAcc                     <  2:470666/141‑1 (MQ=14)

                                                                                                                          gaaCCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTAGCTAAAGTAAccc                    >  2:656401/1‑141 (MQ=255)

                                                                                                                            aCCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATGGTATCTAAAGTAACCCga                  >  2:75324/1‑140 (MQ=255)

                                                                                                                            aCCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGt                  >  1:743945/1‑141 (MQ=255)

                                                                                                                            aCCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGt                  >  2:599293/1‑141 (MQ=255)

                                                                                                                             cccTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCAGTa                 >  1:264310/1‑141 (MQ=255)

                                                                                                                             cccTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCACAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTa                 >  1:100040/1‑141 (MQ=255)

                                                                                                                              ccTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTAt                >  2:561496/1‑141 (MQ=255)

                                                                                                                                       t‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGCCAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAAGCCGTATTTAAGAt         >  1:195235/1‑141 (MQ=255)

                                                                                                                                       t‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGGTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGAt         <  2:314811/141‑1 (MQ=255)

                                                                                                                                            aaaCTTGtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatcaataaattttctcggcataaatgcgtcgtcgattttttattatcttcatgataatcata        >  1:684032‑M1/1‑7 (MQ=255)

                                                                                                                                             aaCTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTa       >  2:458113/1‑141 (MQ=255)

                                                                                                                                              acgtGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTAc      <  2:705884/138‑1 (MQ=255)

                                                                                                                                               cTTGtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatcaataaattttctcggcataaatgcgtcgtctattttttattatcttcatgataatcatattt     <  1:91115‑M1/141‑138 (MQ=255)

                                                                                                                                               cTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACa     <  1:64847/141‑1 (MQ=255)

                                                                                                                                               cTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGGTTTGGGATTGTTAAGGGTTCCGAGGCTCACCGTCAATAAAGCAATTGGAATAAATAGTATCTACAGTAACCCGTATTTAAGATTACa     >  2:84959/1‑141 (MQ=255)

                                                                                                                                                  gtcgaatggtcggcttaatagctcacgctatgccgacattcgtctgcaagtttagttaagggttcttctcaacatcaataaattttctccgcataaatgcgtcgtctattttttattatcttcaggataatcacatttttc  >  2:235715‑M1/1‑1 (MQ=255)

                                                                                                                                                  gCAGACGAATGTCGGCATAGCGTGAGCGATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTg  <  1:552723/141‑1 (MQ=255)

TTACTTTTTGTTTTTCTATAAAGATGATGCTTTTGACGAGATGGAAGAAAAATATGATTATCATGAAGATAATAAAAAATAGACGACGCATTTATGCCGAGAAAATTTATTGATGTTGAGAAGAACCCTTAAC‑‑T‑‑‑‑AAACTTGCAGACGAATGTCGGCATAGCGTGAGCTATTAAGCCGACCATTCGACAAGTTTTGGGATTGTTAAGGGTTCCGAGGCTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTG  >  NC_012417/1842‑2122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.