New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 260294	49 (0.770)	3 (0.050)	3/238	NT	6.1%	intergenic (‑408/‑180)	potD_1/pflB	Spermidine/putrescine‑binding periplasmic protein/Formate acetyltransferase
	?	USA300TCH1516_ALE	= 260312	48 (0.820)					intergenic (‑426/‑162)	potD_1/pflB	Spermidine/putrescine‑binding periplasmic protein/Formate acetyltransferase

AGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGAAAACGTTAACATAG  >  USA300TCH1516_ALE/260154‑260432                                                                                                                                             |                                                                                                                                               aGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG                                                                                                                                                <  2:652654‑M1/141‑1 (MQ=255) aGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG                                                                                                                                                <  1:660738‑M1/141‑1 (MQ=255)     tctTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑g                                                                                                                                         <  2:600044/141‑1 (MQ=255)      ctggatatatAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑Gc                                                                                                                                        <  2:189499/137‑1 (MQ=255)       ttCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑a                                                                                                                                      <  2:678328/141‑1 (MQ=255)       ttCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑a                                                                                                                                      <  1:510787/141‑1 (MQ=255)         cATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AAt                                                                                                                                    >  2:668010/1‑141 (MQ=255)            atataAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAg                                                                                                                                 <  1:695431/141‑1 (MQ=255)             tataAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTACAAG‑AAT‑‑GC‑AATTAGc                                                                                                                                >  1:78645/1‑141 (MQ=255)              ataAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCa                                                                                                                               >  2:690840/1‑141 (MQ=255)              ataAAAGTAAATCTTTATAAGTGTTGATTTAACGCTTAGCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCa                                                                                                                               >  1:428483/1‑141 (MQ=255)               taAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCat                                                                                                                              <  2:128315/141‑1 (MQ=255)                      aaaTCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTActg                                                                                                                       >  1:568920‑M2/1‑138 (MQ=255)                       aaTCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTActgt                                                                                                                      >  1:505311‑M2/1‑137 (MQ=255)                       aaTCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGAATATTAatgt                                                                                                                      <  1:275238‑M2/141‑5 (MQ=255)                           tttCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTActgttaca                                                                                                                  >  1:461531‑M2/1‑133 (MQ=255)                             tCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTActgttacaca                                                                                                                >  2:462013‑M2/1‑131 (MQ=255)                             tCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTActgttacaca                                                                                                                >  2:462321‑M2/1‑131 (MQ=255)                                aaGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAAt                                                                                                             <  2:276289/141‑1 (MQ=255)                                 aGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGtaatatgctaattacattctgttacacaacag                                                                                                                >  2:381563‑M1/1‑109 (MQ=255)                                 aGTGTTGATTTAACGCCTATCAACAATCATTTTTTATAAAGAAATATATATTCCTAAATTAACTTTTAAAACAATAAGAATAGAAAACATCATAACTGGTGTGTAACAG‑AAG‑‑GA‑AAGAAGCATATTACTAATACACaaaaa                                                                                                            >  1:381563/1‑139 (MQ=255)                                   tgtTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAg                                                                                                          <  1:443145/141‑1 (MQ=255)                                    gtTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGt                                                                                                         >  1:403900/1‑141 (MQ=255)                                    gtTGATTTAACGCTTAGCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGt                                                                                                         >  1:456557/1‑141 (MQ=255)                                     ttGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTa                                                                                                        <  1:762333/141‑1 (MQ=255)                                      tGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTAc                                                                                                       <  1:434941/141‑1 (MQ=255)                                               gCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTAt                                                                                              <  2:324156/141‑1 (MQ=255)                                                 ttATCAACAATCATTTTTTATAAACAAATATATTCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATACCTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGt                                                                                            <  1:267322/141‑1 (MQ=255)                                                 ttATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGt                                                                                            <  2:571737/141‑1 (MQ=255)                                                      aacaaTCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGTAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGa                                                                                       >  2:565165/1‑141 (MQ=255)                                                        caaTCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGaca                                                                                     >  2:103828/1‑141 (MQ=255)                                                        aaataatTTTTTATAAACAAATATATACTCCTAAATGAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTACCATATTAATGTTAGATAAATTAGTACAGGTTCGATTTTGGGaca                                                                                     <  2:448955/140‑1 (MQ=255)                                                                   tataAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTtgatg                                                                          <  2:730515/141‑1 (MQ=255)                                                                   tataAAAAAATATATTCCCCCAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTTGTGCGTGGCCTATGTTTTGACATACATTtgatg                                                                          <  1:184055/141‑1 (MQ=255)                                                                      aaaCAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGaaa                                                                       <  1:56731/141‑1 (MQ=255)                                                                             tatataCTCCTAAATTAACTTTTAAATCAATTAAAATAGTAAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTAc                                                                <  1:182317/141‑1 (MQ=255)                                                                                 taCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGaatgcaattagcatattactgttacacaacagttataatgttcactattttcattgctttaaaagttaatttaggagta                                                                 >  1:629436‑M1/1‑61 (MQ=255)                                                                                 taCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGaatgcaattagcatattactgttacacaacagttataatgttcactattttcattgctttaaaagttaatttaggagta                                                                 <  2:629436‑M1/140‑80 (MQ=255)                                                                                 taCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGTAATATGCTAATT‑GCAT‑T‑tgttacacaacagttataatgttcactattttcattgctttaaaagttaatttaggagta                                                               >  1:629436‑M2/1‑80 (MQ=255)                                                                                 taCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGTAATATGC‑TAATTGCAT‑T‑tgttacacaacagttataatgttcactattttcattgctttaaaagttaatttaggagta                                                               <  2:629436‑M2/140‑61 (MQ=255)                                                                                 taCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTAATGAAAATTGACCATaa                                                            >  2:740407/1‑141 (MQ=255)                                                                                       tAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtt                                                      >  1:657825/1‑140 (MQ=255)                                                                                       tAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtg                                                      >  1:622675/1‑141 (MQ=255)                                                                                       tAAATTAACTTGTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtg                                                      <  2:593009/141‑1 (MQ=255)                                                                                            tAACTTTTAAAGAAATGAAAATAGTGAACATTATATCTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaa                                                 <  1:79267/141‑1 (MQ=255)                                                                                                ttttAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaaaaaa                                             >  1:733320/1‑141 (MQ=255)                                                                                                  ttAAAGCAATGAAAATAGTGAACATGATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATc                                           <  2:36734/141‑1 (MQ=255)                                                                                                      aGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTTCTGTTACACAAATTAGTACAGTTTTTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCacaa                                       <  2:220920/141‑1 (MQ=255)                                                                                                      aGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAACTTGTACATAATTTATGTAAAAAAAATCacaa                                       >  2:747506/1‑141 (MQ=255)                                                                                                        cAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCacaaca                                     <  1:54064/141‑1 (MQ=255)                                                                                                           tGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTAACATACATTAGATGAAAATTGTACATAATTTATAGGAAAATAATCACagcaaac                                  >  2:217765/1‑141 (MQ=255)                                                                                                             aaaaTAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACAt                                >  2:340430/1‑141 (MQ=255)                                                                                                              aaaTAGTGAACATTATAACTTTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATg                               <  1:668010/141‑1 (MQ=255)                                                                                                              aaaTAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATg                               >  2:169284/1‑141 (MQ=255)                                                                                                               aaTAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGc                              >  1:735993/1‑141 (MQ=255)                                                                                                                  aGTGAACATTAGAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTAc                           <  2:275238/141‑1 (MQ=255)                                                                                                                    tGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACaa                         <  1:70400/141‑1 (MQ=255)                                                                                                                           tataACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTAt                  <  1:565165/141‑1 (MQ=255)                                                                                                                              aaCTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGaa               >  1:112119/1‑141 (MQ=255)                                                                                                                               aCTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGaaa              <  2:55595/141‑1 (MQ=255)                                                                                                                                cTGTTGTGTAACAG‑AAT‑‑GT‑AATTAGCATATTActgttacacaacagttataatgttcactattttcattgctttaaaagttaatttaggagtatatatttgtttataaaaaatgattgttgataagcgttaaatcaacact             >  2:381563‑M2/1‑32 (MQ=255)                                                                                                                                  gttgtGTAACAG‑AAT‑‑GC‑CATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGAAAACg           >  2:594469/1‑141 (MQ=255)                                                                                                                                    tgtgTAACAGtaatatgctaattgcattctgttacacaacagttataatgttcactattttcattgctttaaaagttaatttaggagtatatatttgtttataaaaaatgattgttgataagcgttaaatcaacacttaga             >  2:462321‑M1/1‑10 (MQ=255)                                                                                                                                    tgtgTAACAGtaatatgctaattgcattctgttacacaacagttataatgttcactattttcattgctttaaaagttaatttaggagtatatatttgtttataaaaaatgattgttgataagcgttaaatcaacacttaga             >  2:462013‑M1/1‑10 (MQ=255)                                                                                                                                     gtgtAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGAAAACGTTa        >  1:479814/1‑141 (MQ=255)                                                                                                                                      tgtAACAGtaatatgctaattgcattctgttacacaacagttataatgttcactattttcattgctttaaaagttaatttaggagtatatatttgtttataaaaaatgattgttgataagcgttaaatcaacacttagaaa           >  1:461531‑M1/1‑8 (MQ=255)                                                                                                                                       gtAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACACCAAACATGCTACAATGACTATGAAAACGTTAAc      >  1:15089/1‑141 (MQ=255)                                                                                                                                       gtAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGAAAACGTTAAc      <  2:78645/141‑1 (MQ=255)                                                                                                                                          aCATtaatattctaattgcattctgttacacaacagttataatgttcactattttcattgctttaaaagttaatttaggagtatatatttgtttataaaaaatgattgttgataagcgttaaatcaacacttagaaagatt       <  1:275238‑M1/141‑138 (MQ=255)                                                                                                                                          aCAGtaatatgctaattgcattctgttacacaacagttataatgttcactattttcattgctttaaaagttaatttaggagtatatatttgtttataaaaaatgattgttgataagcgttaaatcaacacttagaaagatt       >  1:505311‑M1/1‑4 (MQ=255)                                                                                                                                          aCAG‑TAT‑‑GC‑AAGTAGCATATTTCTGTTACACAAATTAGTACAGTTACCATGATGTGACATACATTTGATGAAAACTGTACATGATTTTTGTGAAAGAAATCACACAAAAAAAGCTACACAGAAGATGAAAAGGTTAACATa   >  2:304037/1‑141 (MQ=255)                                                                                                                                          aCAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGAAAACGTTAActcc   >  2:377878/1‑138 (MQ=255)                                                                                                                                          aCAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGAAAACGTTAACATa   >  1:628697/1‑141 (MQ=255)                                                                                                                                           cAGtaatatgctaattgcattctgttacacaacagttataatgttcactattttcattgctttaaaagttaatttaggagtatatatttgtttataaaaaatgattgttgataagcgttaaatcaacacttagaaagattt      >  1:568920‑M1/1‑3 (MQ=255)                                                                                                                                           cAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAAAGACTATGAAAACGTTAAAATAg  >  1:134115/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                               AGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑AAT‑‑GC‑AATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGAAAACGTTAACATAG  >  USA300TCH1516_ALE/260154‑260432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.