BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	512620 =	61 (0.960)	54 (1.230) +TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAA	45/180	NT	56.2%	intergenic (+688/‑6075)	recR/speA_2	Recombination protein RecR/Arginine decarboxylase
*	?	USA300TCH1516_ALE	1998278 =	NA (NA)	54 (1.230) +TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAA	45/180	NT	56.2%	intergenic (‑6/+3329)	USA300TCH1516_01882/USA300TCH1516_01883	tRNA‑Val/tRNA‑Ala

Only 100 of 152 total aligned reads displayed.

AGGGCGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTA  >  USA300TCH1516_ALE/512480‑512758

gtcacacctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaa                                                                                                                                            <  1:669901‑M1/1‑1 (MQ=255)

ggcaaacctgttcccatggcgaacacagcagttaagcgccttagagtcgatggtaggcgaacttacgttccgctagagtagaacgctgccaggcagttttttaatcaatttttggttaaaaaataaaatggacaagataaa                                                                                                                                            >  2:12507‑M1/141‑141 (MQ=255)

aGGGCGTTCAGTACAGATGACAAAGGTGGAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTa                                                                                                                                            >  1:640963/1‑141 (MQ=255)

 tcacacctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaaa                                                                                                                                           <  2:137333‑M1/2‑1 (MQ=255)

 gggCGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTaa                                                                                                                                           >  2:711306/1‑141 (MQ=255)

 gggCGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGATTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGCAAATTAATTATaa                                                                                                                                           >  2:553733/1‑141 (MQ=255)

  cacacctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaaaa                                                                                                                                          <  2:616618‑M1/3‑1 (MQ=255)

    cGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGCAAATTAATTTTaaaaa                                                                                                                                        >  1:478258/1‑141 (MQ=255)

    cGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTaaaaa                                                                                                                                        >  1:284992/1‑141 (MQ=255)

     gTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAg                                                                                                                                       >  2:633101/1‑141 (MQ=255)

     acccgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAg                                                                                                                                       <  2:200039‑M1/6‑1 (MQ=255)

       ctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGtt                                                                                                                                     <  2:657629‑M1/8‑1 (MQ=255)

        cgatcccatgcagaccaaagaagtaaagctccttagcgtcgatggtagtagaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaatttttggttaaaaaataaaatggacaagataaAAAAAGTTa                                                                                                                                    >  2:441063‑M1/133‑141 (MQ=255)

          gTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTAtt                                                                                                                                  >  2:323732/1‑141 (MQ=255)

             ccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGAc                                                                                                                               <  2:576226‑M1/14‑1 (MQ=255)

              cctgccgaaaccagaagttaagctccttagcctcgatggtagtcgaacttaccttcctctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACt                                                                                                                              >  1:102471‑M1/127‑141 (MQ=255)

              aGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACt                                                                                                                              <  1:454666/141‑1 (MQ=255)

               gATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACtt                                                                                                                             >  1:164171/1‑141 (MQ=255)

                  ccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggtttaaaaatagaatggaacaggtaaAAAAAGTTATTgacttgat                                                                                                                          <  1:141774‑M1/19‑4 (MQ=255)

                    gaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATg                                                                                                                        <  1:575314‑M1/21‑1 (MQ=255)

                    cAAAGGTGTAATTTTTACTGTTGGTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATg                                                                                                                        <  2:204681/141‑1 (MQ=255)

                     aaaGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAATTTGAATTATTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGt                                                                                                                       <  1:406243/141‑1 (MQ=255)

                      aaGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGtt                                                                                                                      <  2:750508/141‑1 (MQ=255)

                         gtgtAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTtaat                                                                                                                   <  1:638443/141‑1 (MQ=255)

                          agaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacacgataaAAAAGGGCACTGACTGCaatgttggta                                                                                                                  <  1:689721‑M1/27‑5 (MQ=255)

                           gtAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTtaataa                                                                                                                 >  1:307502/1‑141 (MQ=255)

                           gaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTtgataa                                                                                                                 <  1:264537‑M1/28‑1 (MQ=255)

                             agttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagcccgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagctaaAAAAAGTTATTGACTTAAATGTTGATaaaa                                                                                                               <  1:345689‑M1/30‑1 (MQ=255)

                              aTTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAAt                                                                                                              >  2:490240/1‑141 (MQ=255)

                                  ttACTATTGTTAAGCATTTTGAAAGGCTGTATAGTATTCATTTGTTGAGGCAAACAAAACAACTCTACTTAAGAAAGATCTTGAATTACTAACGATAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGtat                                                                                                          <  2:259425/141‑1 (MQ=255)

                                     cTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTGAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTAtaat                                                                                                       <  2:571390/141‑1 (MQ=255)

                                       gttgttAAGCAGTTTCAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTAtaatta                                                                                                     >  1:568172/1‑141 (MQ=255)

                                       cttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTAtaatta                                                                                                     >  1:355066‑M1/102‑141 (MQ=255)

                                         ttttAAGCAGAAAGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGATTTACTATCGAAAATTAATATTAAAAAGTTATTGATTTACATGTTAATAAAATGTAtaattaat                                                                                                   >  2:249068/3‑141 (MQ=255)

                                         tagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTAtaattaat                                                                                                   >  2:54529‑M1/100‑141 (MQ=255)

                                           gcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTc                                                                                                 <  2:653067‑M1/44‑1 (MQ=255)

                                              tcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTg                                                                                              >  1:89369‑M1/95‑141 (MQ=255)

                                              tcgatggtagtcgaacttacgttccgctagagtagaacgttgacaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTg                                                                                              <  1:152539‑M1/47‑1 (MQ=255)

                                              aGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTg                                                                                              >  1:692676/1‑141 (MQ=255)

                                                cAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTTAATGTTAATAAAATGTATAATTAATTCTTGTc                                                                                            >  2:293076/1‑141 (MQ=255)

                                                cAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTTAATGTTAATAAAATGTATAATTAATTCTTGTc                                                                                            >  2:293201/1‑141 (MQ=255)

                                                cAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTc                                                                                            >  1:54964/1‑141 (MQ=255)

                                                 atggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttattttttttttggtagaaaaataaaatggacaagataaAAAAAGTTATTGGCTTAAATGTTTGTAAAATGTATAATTAATTCTTGTCg                                                                                           <  2:655022‑M1/50‑1 (MQ=255)

                                                 aGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTATTGTCg                                                                                           >  1:384703/1‑141 (MQ=255)

                                                  ttttGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTGAACTTAAGAAAGAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCgg                                                                                          <  1:21572/140‑1 (MQ=255)

                                                   tttGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGt                                                                                         >  1:448887/1‑141 (MQ=255)

                                                    gtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTa                                                                                        >  1:282262‑M1/89‑141 (MQ=255)

                                                    gtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTa                                                                                        <  1:91932‑M1/53‑1 (MQ=255)

                                                      gAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAg                                                                                      >  1:382513/1‑141 (MQ=255)

                                                      agtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAg                                                                                      <  1:763677‑M1/55‑1 (MQ=255)

                                                      agtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAg                                                                                      >  2:549426‑M1/87‑141 (MQ=255)

                                                       gtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGa                                                                                     >  1:724499‑M1/86‑141 (MQ=255)

                                                       gtcgaactgacgtttcggtaaagtagaacgttgacaggcagttttttaatcaaatttaggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGa                                                                                     >  2:673061‑M1/86‑141 (MQ=255)

                                                           ccTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGaaaaa                                                                                 >  1:122539/1‑141 (MQ=255)

                                                            acttacgttccgctagagtagaacgttgccaggcagttctttaatcaaattttggttaaaaaataaaatggaccagataaAAAAAGTTATTGACTTAAATGATGATAAAATGAATAATTAATTCTTGTcggtaaggaagag                                                                                <  2:595437‑M1/61‑7 (MQ=255)

                                                              ttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGa                                                                              >  1:588758‑M1/79‑141 (MQ=255)

                                                              atacggtccgctagagtagaacgttgccaggcagtattttaaacaaattttggttaaaaaataaaatagaaaaaaaaaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGa                                                                              >  2:726779‑M1/79‑141 (MQ=255)

                                                               tataGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGaa                                                                             >  1:260389/1‑141 (MQ=255)

                                                               tataATATTTATTTGTTGAGGCAAAAAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGaa                                                                             <  2:599716/141‑1 (MQ=255)

                                                                acgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAAc                                                                            >  1:629510‑M1/77‑141 (MQ=255)

                                                                 cgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACa                                                                           <  1:504545‑M1/66‑1 (MQ=255)

                                                                   tgccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACAtt                                                                         >  2:436416‑M1/74‑141 (MQ=255)

                                                                    tccgatagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTg                                                                        >  1:36004‑M1/73‑141 (MQ=255)

                                                                      tttatttGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGaa                                                                      >  2:411282/1‑141 (MQ=255)

                                                                      cgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGaa                                                                      <  1:370901‑M1/71‑1 (MQ=255)

                                                                        tatttGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAAAATTGaaaa                                                                    >  2:534829/1‑141 (MQ=255)

                                                                            agtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTGTTGTCGGTAAGAAAAATGAACATTGAAAAATGa                                                                <  2:519840‑M1/77‑1 (MQ=255)

                                                                               tgAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTGAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATg                                                             >  1:581498/1‑141 (MQ=255)

                                                                                  acgttgccaggcagttttttaatcaaattttgggtaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGGCGATAAGAAACATTGCCATTGAAAACTGAATGACa                                                          <  2:726575‑M1/83‑1 (MQ=255)

                                                                                      aacaaaacaaCTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAatat                                                      <  2:642494/141‑1 (MQ=255)

                                                                                      aacaaaacaaCTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTCAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGCAAAATAAACACTGAAAACTAAATGACAagat                                                      >  1:515684/1‑141 (MQ=255)

                                                                                       acaaaacaaCTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTACTTCTTGTCGTTAAGAAAAATGAACATTGAAAACTGAATGACAATATg                                                     >  1:141675/1‑141 (MQ=255)

                                                                                         caggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTc                                                   <  1:619359‑M1/90‑1 (MQ=255)

                                                                                         caggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAAGATgta                                                   <  1:433284‑M1/90‑2 (MQ=255)

                                                                                            acaacTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAACGAACATTGAAAACTGAATGACAATATGTCAAc                                                >  1:513723/1‑141 (MQ=255)

                                                                                              agttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGt                                              >  2:690421‑M1/47‑141 (MQ=255)

                                                                                               attttttaatccaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGtt                                             >  2:152385‑M1/46‑141 (MQ=255)

                                                                                               actcaactTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGtt                                             <  2:457346/141‑1 (MQ=255)

                                                                                                       atcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCaa                                     >  1:223017‑M1/38‑141 (MQ=255)

                                                                                                         aGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAGAACTGAATGACAATATGTCAACGTTAATTCCaaaa                                   <  1:490240/141‑1 (MQ=255)

                                                                                                          aaaaTAACTTGAATTACTAACGAAAATTAATTTAAAAAATTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCcaaaa                                  <  2:348477/140‑1 (MQ=255)

                                                                                                             ttttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACg                               <  2:659376‑M1/110‑1 (MQ=255)

                                                                                                              tAACTTGAATTAGTAACGAAAATTAATTTTAAAGAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCATCGTTAATTCCAAAAAACGt                              <  2:429532/141‑1 (MQ=255)

                                                                                                               tttgagaaaaaataaaatggaaaagataaAAAAAGTTACTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAACCTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTa                             >  2:586795‑M1/30‑141 (MQ=255)

                                                                                                                          ataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTATTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAAGTCAAAAAAACataacaatacaata                  <  2:404478‑M1/123‑6 (MQ=255)

                                                                                                                           tAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAGTATGTCAACATTAATTCCAAAAAAAGTAACTATAAGTTAc                 >  2:272673/1‑141 (MQ=255)

                                                                                                                            aaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATTAGTTACa                >  1:483632‑M1/17‑141 (MQ=255)

                                                                                                                             aCGAAAATTAATTTTAAAATGTTGTTGATTTAAATGTTACTAAATGGCGGAAGGAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACaa               <  1:553733/141‑1 (MQ=18)

                                                                                                                             aCGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACaa               <  1:711306/141‑1 (MQ=255)

                                                                                                                              cGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACaaa              <  1:322893/141‑1 (MQ=255)

                                                                                                                                 ggaaaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACat           >  2:152539‑M1/12‑141 (MQ=255)

                                                                                                                                  aattaattTTAAAATGTCATTAAATTAAATGTTTATAAAATGAATAAGTAATTCGTGTCCGTAAGAAAAATGAACATTGAAAACTGAACGACATTATGTCAAAAAAAAAAAAAAAAAACGTAACTATAAGTTACAAACatt          <  2:459334/141‑1 (MQ=16)

                                                                                                                                   attaattTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACatta         <  1:411282/141‑1 (MQ=255)

                                                                                                                                     aagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACattatt       <  1:657690‑M1/134‑1 (MQ=255)

                                                                                                                                      aattTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTAttt      <  1:91862/141‑1 (MQ=255)

                                                                                                                                       gataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTa     >  1:759096‑M1/6‑141 (MQ=255)

                                                                                                                                       aataaAAAAAGTGATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGACTGACAATATGTCAACAAAAAAAAAAAAAAACGTAACTATAAGTTACAAACATTATTTa     >  2:664927‑M1/6‑141 (MQ=255)

                                                                                                                                        ttttAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAg    <  2:510094/141‑1 (MQ=255)

                                                                                                                                        ataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTAAAAACATTATTTAg    <  2:239265‑M1/137‑1 (MQ=255)

                                                                                                                                         taaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGt   >  2:316102‑M1/4‑141 (MQ=255)

AGGGCGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTA  >  USA300TCH1516_ALE/512480‑512758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.