| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 907281 | 45 (0.870) | 4 (0.080) | 3/240 | NT | 8.6% | intergenic (+390/‑39) | USA300HOU_RS04490/USA300HOU_RS04495 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 907290 | 44 (0.920) | intergenic (+399/‑30) | USA300HOU_RS04490/USA300HOU_RS04495 | hypothetical protein/hypothetical protein | |||||
ACACCAGTGTTTATTGATAATATTGGTGGGTTTGAGGAGTAGCAATAAAATAAAGGAGGTAATTGTGTAAAATATCTCTTTTTGTTATTTCTTATTTATTTACAACCGATAAAATTAAATGTATTATATATATAACGATCTAGCCATAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/907132‑907281‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagccataacCCGAATAGAGTTATGGCTAGATCGTTATATATATAATACATTTAATTTTATCGGTTGTAAATAAATAAGAAATAACAAAAAGAGATATTTTACACAATTACCTCCTTTATTTTATTGCTACTCCTCAAACCCACCA < USA300TCH1516_ALE/907290‑907155 ACACCAGTGTTTATTGATAATATTGGTGGGTTTGAGGAGTAGCAATAAAATAAAGGAGGTAATTGTGTAAAATATCTCTTTTTGTTATTTCTTATTTATTTACAACCGATAAAATTAAATGTATTATATATATAACGATCT > 1:111118/1‑141ACACCAGTGTTTATTGATAATATTGGTGGGTTTGAGGAGTAGCAATAAAATAAAGGAGGTAATTGTGTAAAATATCTCTTTTTGTTATTTCTTATTTATTTACAACCGATAAAATTAAATGTATTATATATATAACGATCT > 1:508223/1‑141 GTTTATTGATAATATTGGTGGGTTTGAGGAGTAGCAATAAAATAAAGGAGGTAATTGTGTAAAATATCTCTTTTTGTTATTTCTTATTTATTTACAACCGATAAAATTAAATGTATTATATATATAACGATCTAGCCATAA < 1:123504/141‑1 GATAATATTGGTGGGTTTGAGGAGTAGCAATAAAATAAAGGAGGTAATTGTGTAAAATATCTCTTTTTGTTATTTCTTATTTATTTACAACCGATAAAATTAAATGTATTATATATATAACGATCTAGCCATAACCCGAAT < 1:361909/141‑1 GATAATATTGGTGGGTTTGAGGAGTAGCAATAAAATAAAGGAGGTAATTGTGTAAAATATCTCTTTTTGTTATTTCTTATTTATTTACAACCGATAAAATTAAATGTATTATATATATAACGATCTAGCCATAACCCGAAT < 2:289330/141‑1 TTTCTTATTTATTTACAACCGATAAAATTAAATGTATTATATATATAACGATCTAGCCATAACTCTATTCGGGTTATGGCTAGATCGTTATATATATCATACATTTAATTTTATCGGTTGTAAATTAATACGAAATAAAAA > 2:538581/1‑141 TTACAACCGATAAAATTAAATGTATTATATATATAACGATCTAGCCATAACTCTATTCGGGTTATGGCTAGATCGTTATATATATAATACATTTAATTTTATCGGTTGTAAATAAATAAGAAATAACAAAAAGAGATATTT > 1:382133/1‑141 AGCCATAACCCGAATAGAGTTATGGCTAGATCGTTATATATATAATACATTTAATTTTATCGGTTGTAAATAAATAAGAAATAACAAAAAGAGATATTTTACACAATTACCTCCTTTATTTTATTGCTCCTCCTCAAACCa > 1:181536/1‑140 CATAACCCGAATAGAGTTATGGCTAGATCGTTATATATATAATACATTTAATTTTATCGGTTGTAAATAAATAAGAAATAACAAAAAGAGATATTTTACACAATTACCTCCTTTATTTTATTGCTGCTCCTCAAACCCACC < 1:452910/141‑1 ATAACCCGAATAGAGTTATGGCTAGATCGTTATATATATAATACATTTAATTTTATCGGTTGTAAATAAATAAGAAATAACAAAAAGAGATATTTTACACAATTACCTCCTTTATTTTATTGCTACTCCTCAAACCCACCA > 1:360257/1‑141 ACACCAGTGTTTATTGATAATATTGGTGGGTTTGAGGAGTAGCAATAAAATAAAGGAGGTAATTGTGTAAAATATCTCTTTTTGTTATTTCTTATTTATTTACAACCGATAAAATTAAATGTATTATATATATAACGATCTAGCCATAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/907132‑907281‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagccataacCCGAATAGAGTTATGGCTAGATCGTTATATATATAATACATTTAATTTTATCGGTTGTAAATAAATAAGAAATAACAAAAAGAGATATTTTACACAATTACCTCCTTTATTTTATTGCTACTCCTCAAACCCACCA < USA300TCH1516_ALE/907290‑907155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |