Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1604567	1604652	86	2 [1]	[1] 2	USA300HOU_RS07955/Int‑Tn_2	hypothetical protein/Transposase from transposon Tn916

TTTCAATAGAAAAAATCAATAATACAGGAGTATTGATAACCTTGTTTTTTTCACTAACTAAACCTATCATTGTTAGATATTTATATGGTATGTAACCTAAAACTCCTGTAAGAAGAAGCGCCCCTAGAAATTGAGTCATCTTATCACCTACTTTTTATTTTATTAT  >  USA300TCH1516_ALE/1604416‑1604581                                                                                                                                                       |                tttCAATAGAAAAAATCAATAATACAGGAGTATTGATAACCTTGTTTTTTTCACTAACTAAACCTATCATTGTTAGATATTTATATGGTATGTAACCTAAAACTCCTGTAAGAAGAAGCGCCCCTAGAAATTGAGTCATCTTATCACCTAc                 >  3:283404/1‑151 (MQ=255)                tCAATAATACAGGAGTATTGATAACCTTGTTTTTTTCACTAACTAAACCTATCATTGTTAGATATTTATATGGTATGTAACCTAAAACTCCTGTAAGAAGAAGCGCCCCTAGAAATTGAGTCATCTTATCACCTACTTTTTATTTtattat  <  4:416964/151‑1 (MQ=255)                                                                                                                                                       |                TTTCAATAGAAAAAATCAATAATACAGGAGTATTGATAACCTTGTTTTTTTCACTAACTAAACCTATCATTGTTAGATATTTATATGGTATGTAACCTAAAACTCCTGTAAGAAGAAGCGCCCCTAGAAATTGAGTCATCTTATCACCTACTTTTTATTTTATTAT  >  USA300TCH1516_ALE/1604416‑1604581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑