New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_bme_pgi 2252796 =NA (NA)32 (0.170) 17/182 18.1 NA noncoding (1/91 nt) RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913_3_bme_pgi 2252829 = NA (NA)noncoding (34/91 nt) RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 185 total aligned reads displayed.

GCTTAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTC  >  NC_000913_3_bme_pgi/2252730‑2252928
                                                                                                   |                                                                                                   
gCTTAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGcc                                                                                                     >  1:480082/1‑100 (MQ=255)
 cTTAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCTAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCt                                                                                                    <  1:4146187/100‑1 (MQ=255)
 cTTAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGcc                                                                                                     >  1:4404716/1‑99 (MQ=255)
 cTTAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGcc                                                                                                     >  2:3199264/1‑99 (MQ=255)
  ttAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGcc                                                                                                     >  2:4752477/1‑98 (MQ=255)
  ttAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTa                                                                                                   >  1:1095449/1‑100 (MQ=255)
   tAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTa                                                                                                   >  2:72511/1‑99 (MQ=255)
    aaaCAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTAc                                                                                                  <  2:2974786/99‑1 (MQ=255)
     aacaacCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACa                                                                                                 <  1:554371/99‑1 (MQ=255)
      acaacCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACaaa                                                                                               >  2:644315/1‑100 (MQ=255)
       caacCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACaaa                                                                                               >  2:1078085/1‑99 (MQ=255)
        aacCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATc                                                                                             <  2:4457092/100‑1 (MQ=255)
        aacCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATc                                                                                             <  1:4762757/100‑1 (MQ=255)
           cctaccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAgg                                                                                          <  2:394595/100‑1 (MQ=255)
           cctaccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAgg                                                                                          <  1:1207928/100‑1 (MQ=255)
           cctaccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAg                                                                                           <  1:738111/99‑1 (MQ=255)
            ctaccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAgg                                                                                          >  2:3595075/1‑99 (MQ=255)
            ctaccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGc                                                                                         <  1:1647412/100‑1 (MQ=255)
            ctaccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGc                                                                                         <  2:22488/100‑1 (MQ=255)
               ccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCa                                                                                        <  1:2208971/98‑1 (MQ=255)
                 ctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAAttt                                                                                    >  2:2124/1‑100 (MQ=255)
                    tCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTc                                                                                   <  2:1054362/98‑1 (MQ=255)
                      tGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGc                                                                                >  1:2440615/1‑99 (MQ=255)
                      tGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGc                                                                                >  2:2054241/1‑99 (MQ=255)
                        ccGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGc                                                                                >  2:1830854/1‑97 (MQ=255)
                        ccGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCa                                                                               <  1:2062017/98‑1 (MQ=255)
                        ccGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAg                                                                             <  1:1798257/100‑1 (MQ=255)
                          gATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGt                                                                            >  1:3634540/1‑99 (MQ=255)
                              aCGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATg                                                                       <  1:3955458/100‑1 (MQ=255)
                                gcgcTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGtn                                                                     <  2:1936760/100‑2 (MQ=255)
                                  gcTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAgg                                                                   <  1:642148/100‑1 (MQ=255)
                                   cTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGc                                                                  >  1:722796/1‑100 (MQ=255)
                                     ttCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCt                                                                >  1:822645/1‑100 (MQ=255)
                                     ttCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCt                                                                >  1:2805951/1‑100 (MQ=255)
                                     ttCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCt                                                                >  2:3244191/1‑100 (MQ=255)
                                     ttCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCt                                                                >  1:537568/1‑100 (MQ=255)
                                      tCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGcc                                                                 <  1:634805/98‑1 (MQ=255)
                                      tCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGcc                                                                 <  2:3905263/98‑1 (MQ=255)
                                      tCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCt                                                                >  2:28560/1‑99 (MQ=255)
                                       cATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTg                                                               <  2:4367086/99‑1 (MQ=255)
                                       cATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGa                                                              >  2:2308739/1‑100 (MQ=255)
                                       cATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGa                                                              >  2:2469841/1‑100 (MQ=255)
                                        aTTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGa                                                              >  1:706555/1‑99 (MQ=255)
                                            ntGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGCAAATGTAGGCCTGa                                                              >  2:823196/2‑95 (MQ=255)
                                            gTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAg                                                          <  2:415925/99‑1 (MQ=255)
                                            gTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAg                                                          <  1:2281063/99‑1 (MQ=255)
                                            gTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAg                                                          <  2:415969/99‑1 (MQ=255)
                                            gTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGc                                                         >  2:4312943/1‑100 (MQ=255)
                                             tGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCt                                                        <  2:1210092/100‑1 (MQ=255)
                                              gCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCtt                                                       >  2:575907/1‑100 (MQ=255)
                                              gCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCtt                                                       >  2:3768553/1‑100 (MQ=255)
                                               ccAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTg                                                      <  2:1366295/100‑1 (MQ=255)
                                                cAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTgc                                                     >  1:1331746/1‑100 (MQ=255)
                                                cAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATATCAGCAAGTAAATGTAGGCCTGATAAGCTTgc                                                     <  2:3712616/100‑1 (MQ=255)
                                                  aTGGTGTAACGATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTgcgc                                                   <  2:4841667/100‑1 (MQ=255)
                                                  aTGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTgcgc                                                   <  1:2471528/100‑1 (MQ=255)
                                                   tGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTgcg                                                    >  1:1816652/1‑98 (MQ=255)
                                                   tGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTgc                                                     <  1:1542413/97‑1 (MQ=255)
                                                   tGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCa                                                  >  2:3405524/1‑100 (MQ=255)
                                                     gtgtAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATc                                                <  1:1589140/100‑1 (MQ=255)
                                                      tgtAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCa                                               <  2:3231137/100‑1 (MQ=255)
                                                      ngtAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCAt                                                 >  1:3311028/2‑98 (MQ=255)
                                                        tAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAg                                              <  2:1246294/99‑1 (MQ=255)
                                                         naCAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAgg                                             >  1:2195682/2‑99 (MQ=255)
                                                         aaCAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAgg                                             >  1:450742/1‑99 (MQ=255)
                                                          aCAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGc                                            <  1:4632219/99‑1 (MQ=255)
                                                          aCAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGc                                            >  2:2075838/1‑99 (MQ=255)
                                                           cAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCaa                                          >  1:2880197/1‑100 (MQ=255)
                                                            aaTGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAAt                                         <  1:3833709/100‑1 (MQ=255)
                                                             aTGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATTAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATg                                        <  2:2933643/100‑1 (MQ=255)
                                                                  gCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACt                                   >  2:1297562/1‑100 (MQ=255)
                                                                  gCCGGATAAGACGCGTTAAGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACt                                   >  1:2853541/1‑100 (MQ=38)
                                                                     ggATGCGACGCTTAACGCGTCTTATCCGTCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCaa                                <  1:4302475/100‑1 (MQ=255)
                                                                      gATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAg                               <  1:2352388/100‑1 (MQ=255)
                                                                      gATGCGACGCTCAACGCGTCTTATCCGGCCTACAATTCAGGCAAGTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACt                                   >  2:4061669/1‑96 (MQ=255)
                                                                       aTGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGc                              <  2:4524117/100‑1 (MQ=255)
                                                                          cGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTa                            >  2:484779/1‑99 (MQ=255)
                                                                          cGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTa                            >  2:1517547/1‑99 (MQ=255)
                                                                            aCGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTaaa                          <  2:1197548/99‑1 (MQ=255)
                                                                             cGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAAcc                        <  1:3579922/100‑1 (MQ=255)
                                                                              gCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCa                       <  2:2514239/100‑1 (MQ=255)
                                                                               cTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCaa                      >  2:1315059/1‑100 (MQ=255)
                                                                                 tAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAAt                     >  1:3625435/1‑99 (MQ=255)
                                                                                  aaCGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATa                    <  2:658996/99‑1 (MQ=255)
                                                                                  aaCGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATa                    >  1:1251137/1‑99 (MQ=255)
                                                                                  aaCGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATa                    <  1:1078603/99‑1 (MQ=255)
                                                                                  aaCGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATa                    >  1:260682/1‑99 (MQ=255)
                                                                                   aCGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATaaa                  <  2:2344506/100‑1 (MQ=255)
                                                                                     gcgTCTTATCCTGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGa                <  2:3120970/100‑1 (MQ=255)
                                                                                      cgTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGaa               >  2:3634026/1‑100 (MQ=255)
                                                                                         cTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAAccc            >  1:3100044/1‑100 (MQ=255)
                                                                                           tATCTGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACCCAAGCTAAACCAAAAAAGAACCCgg          >  2:161262/1‑100 (MQ=255)
                                                                                           tATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCgg          >  2:2788969/1‑100 (MQ=255)
                                                                                            aTCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCgg          >  1:4043971/1‑99 (MQ=255)
                                                                                             tCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGc         <  1:28577/99‑1 (MQ=255)
                                                                                              ccGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCaa       >  2:3378842/1‑100 (MQ=255)
                                                                                                ggCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGACCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCAGGCAATg     >  2:2555795/1‑100 (MQ=255)
                                                                                                  ccTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGt   >  1:2157914/1‑100 (MQ=255)
                                                                                                   cTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTc  <  1:783621/100‑1 (MQ=255)
                                                                                                   cTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTc  <  1:58043/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GCTTAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTC  >  NC_000913_3_bme_pgi/2252730‑2252928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.