New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_bme_pgi = 3411602166 (0.870)20 (0.120) 14/174 17.3 11.8% intergenic (+35/‑51) fis/yhdJ global DNA‑binding transcriptional dual regulator/DNA adenine methyltransferase, SAM‑dependent
?NC_000913_3_bme_pgi = 3411616 152 (0.900)intergenic (+49/‑37) fis/yhdJ global DNA‑binding transcriptional dual regulator/DNA adenine methyltransferase, SAM‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 168 total aligned reads displayed.

CGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTAAGACCA  >  NC_000913_3_bme_pgi/3411503‑3411701
                                                                                                   |                                                                                                   
cgcTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCt                                                                                                     <  2:1196384/100‑1 (MQ=255)
  cTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTAc                                                                                                   >  1:189748/1‑100 (MQ=255)
    gatgatGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTc                                                                                                 >  2:1633742/1‑100 (MQ=255)
    gatgatGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTc                                                                                                 >  2:1487785/1‑100 (MQ=255)
     atgatgGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCg                                                                                                <  2:1972900/100‑1 (MQ=255)
       gatgGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCgg                                                                                               >  1:2835298/1‑99 (MQ=255)
        atgGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCa                                                                                             <  1:4230301/100‑1 (MQ=255)
          gggCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTAGATCAAAAAGACGCTACTCGGCATg                                                                                           >  2:4647857/1‑100 (MQ=255)
           ggCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATgg                                                                                          <  2:4167986/100‑1 (MQ=255)
            gCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATggg                                                                                         <  1:3172730/100‑1 (MQ=255)
              aTCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATgggg                                                                                        >  2:2015619/1‑99 (MQ=255)
              aTCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATgggg                                                                                        >  2:2014955/1‑99 (MQ=255)
              aTCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGa                                                                                       <  1:434126/100‑1 (MQ=255)
               tCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATgggg                                                                                        >  1:1519339/1‑98 (MQ=255)
                cAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATgggg                                                                                        >  1:1560414/1‑97 (MQ=255)
                cAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAg                                                                                     >  1:943937/1‑100 (MQ=255)
                 aaCCCTGGTACGCGGCGCAAAAAATCGGGAAAAGACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTTCTCGGCATGGGGAAg                                                                                     <  2:4340731/99‑1 (MQ=255)
                  aCCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAgcg                                                                                   <  2:631605/100‑1 (MQ=255)
                  aCCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAgcg                                                                                   >  2:3292099/1‑100 (MQ=255)
                   ccGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAgcgc                                                                                  >  1:1464385/1‑100 (MQ=255)
                     gTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCt                                                                                >  1:717660/1‑100 (MQ=255)
                     gTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCt                                                                                >  1:1315037/1‑100 (MQ=255)
                       ggTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCttt                                                                              >  2:2245837/1‑100 (MQ=255)
                        gTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCttt                                                                              <  2:1419756/99‑1 (MQ=255)
                         tACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCttttt                                                                            >  1:915533/1‑100 (MQ=255)
                         tACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCttttt                                                                            >  1:915456/1‑100 (MQ=255)
                         tACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCttttt                                                                            <  2:477460/100‑1 (MQ=255)
                         tACGCTGCGTAAAAAATTG‑AAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCtttttt                                                                           <  1:4105870/100‑1 (MQ=255)
                          aCGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCttttt                                                                            >  2:3849543/1‑99 (MQ=255)
                           cGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCtttttt                                                                           <  1:2468719/99‑1 (MQ=255)
                           cGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCtttttt                                                                           <  1:976250/99‑1 (MQ=255)
                           cGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCtttttt                                                                           <  1:3717355/99‑1 (MQ=255)
                           cGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTta                                                                          <  2:1080445/100‑1 (MQ=255)
                            gCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTtat                                                                         <  2:785533/100‑1 (MQ=255)
                             cTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAACGGCGCTACTCGGCATGGGGAAGCGCCTTTTTtata                                                                        <  2:3967209/100‑1 (MQ=255)
                                cGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTta                                                                          <  1:2183865/95‑1 (MQ=255)
                                cGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAg                                                                       <  1:3254210/98‑1 (MQ=255)
                                 gTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAgg                                                                      <  1:2158435/98‑1 (MQ=255)
                                 gTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGgtg                                                                    <  1:2173335/100‑1 (MQ=255)
                                 gTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGgtg                                                                    >  2:2432669/1‑100 (MQ=255)
                                  tAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCttttt                                                                            <  2:429358/91‑1 (MQ=255)
                                    aaaaaTTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGgtg                                                                    <  1:2516799/97‑1 (MQ=255)
                                    aaaaaTTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTca                                                                 >  2:2470168/1‑100 (MQ=255)
                                     aaaaTTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTcac                                                                <  1:4552666/100‑1 (MQ=255)
                                     aaaaTTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTca                                                                 >  1:2940802/1‑99 (MQ=255)
                                      aaaTTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTcac                                                                >  1:2311200/1‑99 (MQ=255)
                                      aaaTTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTcac                                                                >  1:2310893/1‑99 (MQ=255)
                                        aTTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTcaca                                                               >  1:243994/1‑98 (MQ=255)
                                         ttGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAg                                                            <  1:523870/100‑1 (MQ=255)
                                         ttGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAg                                                            >  2:3118958/1‑100 (MQ=255)
                                          tGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAgg                                                           >  1:272137/1‑100 (MQ=255)
                                           gAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAgg                                                           >  1:4211995/1‑99 (MQ=255)
                                           gAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAgg                                                           >  2:1630323/1‑99 (MQ=255)
                                             aaaaaTACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAgg                                                           >  2:4265946/1‑97 (MQ=255)
                                               aaaTACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTg                                                      <  1:4696048/100‑1 (MQ=255)
                                               aaaTACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTg                                                      <  1:2493914/100‑1 (MQ=255)
                                                    cGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCAt                                                 >  1:2390413/1‑100 (MQ=255)
                                                     ggCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATg                                                <  1:2644890/100‑1 (MQ=255)
                                                     ggCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATg                                                <  1:466894/100‑1 (MQ=255)
                                                     ggCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATg                                                <  2:3654175/100‑1 (MQ=255)
                                                       cATGAACTAATTCAGGTTAGCTAAATGCTTGATCAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATgag                                              <  2:3976965/100‑1 (MQ=255)
                                                          gAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGaa                                            >  1:3418695/1‑99 (MQ=255)
                                                           aaCTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAAc                                           <  1:2155719/99‑1 (MQ=255)
                                                            aCTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAg                                         <  1:4147786/100‑1 (MQ=255)
                                                             cTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAgg                                        <  1:302067/100‑1 (MQ=255)
                                                             cTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAg                                         >  1:388930/1‑99 (MQ=255)
                                                               aaTTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGAt                                      >  2:1947896/1‑100 (MQ=255)
                                                               aaTTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGAt                                      >  2:1411021/1‑100 (MQ=255)
                                                                aTTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGa                                       <  1:1211974/98‑1 (MQ=255)
                                                                 ttCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGAtgt                                    <  2:3469205/100‑1 (MQ=255)
                                                                 ttCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGAtgt                                    <  1:1860518/100‑1 (MQ=255)
                                                                     ggTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTg                                                      >  1:1756922/1‑78 (MQ=255)
                                                                      gTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGa                                                     <  2:1753566/78‑1 (MQ=255)
                                                                         aGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGAc                            >  2:2628966/1‑100 (MQ=255)
                                                                          gCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGAcc                           >  2:3066792/1‑100 (MQ=255)
                                                                          gCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGAc                            <  2:3715703/99‑1 (MQ=255)
                                                                          gCTAAACGCGTGATTAAAAAGGCGCTACTCGGCATGGGGACGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGAAGTGAACCGa                             >  2:1069475/1‑98 (MQ=255)
                                                                            tAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCg                         >  2:1894356/1‑100 (MQ=255)
                                                                                 gCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTg                    >  2:2057999/1‑100 (MQ=255)
                                                                                  cTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTgg                   <  2:2325745/100‑1 (MQ=255)
                                                                                  cTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTgg                   >  2:2109799/1‑100 (MQ=255)
                                                                                    tGATTAACAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGt                  >  1:3864262/1‑99 (MQ=255)
                                                                                     gATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTa                 <  1:3554595/99‑1 (MQ=255)
                                                                                      aTTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAAt               >  1:4583240/1‑100 (MQ=255)
                                                                                       ttAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAAt               >  1:1694648/1‑99 (MQ=255)
                                                                                       ttAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATg              <  2:1176464/100‑1 (MQ=255)
                                                                                         aaaaaGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGa             <  1:2577990/99‑1 (MQ=255)
                                                                                         aaaaaGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGa             <  1:2480443/99‑1 (MQ=255)
                                                                                          aaaaGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTGTAGGTGTCACAAAGGGAGTGACCATGCGAACAGGATGTGAACCGACCCGCGTAGGTAATg              >  2:2748941/1‑97 (MQ=255)
                                                                                          aaaaGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAg           <  1:1032285/100‑1 (MQ=255)
                                                                                             aGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTa        <  1:3594865/100‑1 (MQ=255)
                                                                                              ggCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCt         >  1:2032921/1‑98 (MQ=255)
                                                                                               gcgcTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCt         >  2:1505988/1‑97 (MQ=255)
                                                                                                cgcTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTAAGa     <  2:3719506/100‑1 (MQ=255)
                                                                                                cgcTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTAAGa     >  2:3182541/1‑100 (MQ=255)
                                                                                                cgcTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTAAGa     <  1:3487756/100‑1 (MQ=255)
                                                                                                 ncTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTAAGAc    >  2:2814706/2‑100 (MQ=255)
                                                                                                  cTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTAAGAc    >  2:2399524/1‑99 (MQ=255)
                                                                                                  cTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTAAGAc    >  1:2637904/1‑99 (MQ=255)
                                                                                                   tACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTAAGACCa  >  2:2987553/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
CGCTGATGATGGGCATCAACCGTGGTACGCTGCGTAAAAAATTGAAAAAATACGGCATGAACTAATTCAGGTTAGCTAAATGCTTGATTAAAAAGGCGCTACTCGGCATGGGGAAGCGCCTTTTTTATAGGTGTCACAAAGGGAGTGACCATGAGAACAGGATGTGAACCGACCCGGTTTGGTAATGAAGCTAAGACCA  >  NC_000913_3_bme_pgi/3411503‑3411701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.