| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 2258692 = | 168 (0.880) | 20 (0.110) | 16/188 | 16.6 | 10.4% | coding (605/942 nt) | psuK | pseudouridine kinase |
| ? | NC_000913_3_bme_pgi | 2258736 = | 183 (0.990) | coding (561/942 nt) | psuK | pseudouridine kinase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CATGGAAATGTGTCAAAGTGCGCGACCGTCTAAATCAGATCCACACTCTCAAGCCAAACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_bme_pgi/2258794‑2258692‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTTTGACACATTTCCATGCCGAAACCGGATCGACAAATACGGGTACGTTGGCGGCATT > NC_000913_3_bme_pgi/2258736‑2258834 CATGGAAATGTGTCAAAGTGCGCGACCGTCTAAATCAGATCCACACTCTCAAGCCAAACCGCCTTGAAGCGGAAACCCTGAGTGTGATTGCGCTGTCAGG > 1:693896/1‑100CATGGAAATGTGTCAAAGTGCGCGACCGTCTAAATCAGATCCACACTCTCAAGCCAAACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGG > 2:1091215/1‑100CATGGAAATGTGTCAAAGTGCGCGACCGTCTAAATCAGATCCACACTCTCAAGCCAAACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGG < 1:4432838/100‑1CATGGAAATGTGTCAAAGTGCGCGACCGTCTAAATCAGATCCACACTCTCAAGCCAAACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGG < 1:4432903/100‑1 TGGAAATGTGTCAAAGTGCGCGACCGTCTAAATCAGATCCACACTCTCAAGCCAAACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGC > 1:3429365/1‑100 GGAAATGTGTCAAAGTGCGCGACCGTCTAAATCAGATCCACACTCTCAAGCCAAACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGC > 2:1720880/1‑99 GAAATGTGTCAAAGTGCGCGACCGTCTAAATCAGATCCACACTCTCAAGCCAAACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGCG < 2:2410710/99‑1 CAGATCCACACTCTCAAGCCAAACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGCGGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGAC > 2:4062324/1‑100 CTCAAGCCAAACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGCGGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTT > 2:1706399/1‑100 AGCCAAACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGCGGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTTTGA > 1:647908/1‑99 GCCAAACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGCGGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTTTGACA > 1:717626/1‑100 GCCAAACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGCGGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTAGCGCACTTTGACA > 2:3759246/1‑100 CCAAACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGCGGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTTTGACA > 2:1649288/1‑99 CCAAACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGCGGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTTTGACA > 2:1662041/1‑99 CAAACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGCGGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTTTGACACA > 1:3367729/1‑100 CAAACCGCCTTGAAGCGGAAAACCTGAGTGGGATTGCGCTGTCAGGGCGGTTTGGCTTGCGAGTGTG‑GATCTGATTTAGACGGTCGCGCGCTTTGACACA > 2:4743151/1‑100 AAACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGCGGTTTGACTTGAGAGTGTGTGATCTGATTTAGACGGTCGCGCACTTTGACACA > 2:2089454/1‑100 AAACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGCGGTTTGACTTGAGAGTGTGTGATCTGATTTAGACGGTCGCGCACTTTGACACA > 2:2089409/1‑100 ACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGCGGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTTTGACACATTT > 1:1847243/1‑100 CCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGCGGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGCCGGTCGCGCACTTTGACACATTTC > 2:3626784/1‑100 CGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGCGGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTTTGACACATTTC > 1:589682/1‑99 GCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGCGGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTTTGACACATTTCCA > 1:1136620/1‑100 CCTTGAAGCGGAAACCCTGAGTGGGATTGCGCT‑TCAAGGCGGTTTGGCCTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTTTGACACATTTCCATG > 2:2585685/1‑100 CTTGAAGCGGAAACCCTGAGTGGGATTGCGCT‑TCAAGGCGGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTTTGACACATTTCCATGC > 1:832849/1‑100 GAAGCGGAAACCCTGAGTGGGATTGCGCT‑TCAAGGCGGTTTGGCTTGAGAGTGTG‑GATCTGTTCTGGCCGGTCGCGCACTATGCCACATTTCCATGCCG > 2:1643703/1‑99 GAAACCCTGAGTGGGATTGCGCT‑TCAAGGCGGTTTGGCTTGAGAGTATG‑GATCTGATTTAGACGGTCGCGCACTTTGACACATTTCCATGCCGAAACCG > 1:2029521/1‑99 TGGGATTGCGCTGTCAGGGCGGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTTTGACACATTTCCATGCCGAAACCGGATCGACAAAT < 1:1711689/100‑1 GCGGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTTTGACACATTTCCATGCCGAAACCGGATCGACAAATACGGGTACGTTGGCGGCA < 1:2070208/100‑1 CGGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTTTGACACATTTCCATGCCGAAACCGGATCGACAAATACGGGTACGTTGGCGGCAT < 2:848256/100‑1 CGGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTTTGACACATTTCCATGCCGAAACCGGATCGACAAATACGGGTACGTTGGCGGCAT < 2:3847985/100‑1 GGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTTTGACACATTTCCATGCCGAAACCGGATCGACAAATACGGGTACGTTGGCGGCATT < 1:1248311/100‑1 GGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTTTGACACATTTCCATGCCGAAACCGGATCGACAAATACGGGTACGTTGGCGGCAT > 2:515637/1‑99 CATGGAAATGTGTCAAAGTGCGCGACCGTCTAAATCAGATCCACACTCTCAAGCCAAACCGCCTTGAAGCGGAAACCCTGAGTGGGATTGCGCTGTCAGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_bme_pgi/2258794‑2258692‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgGTTTGGCTTGAGAGTGTG‑GATCTGATTTAGACGGTCGCGCACTTTGACACATTTCCATGCCGAAACCGGATCGACAAATACGGGTACGTTGGCGGCATT > NC_000913_3_bme_pgi/2258736‑2258834 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |