New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	2737519 =	34 (0.740)	4 (0.090)	4/268	6.2	10.7%	intergenic (+24/‑80)	raiA/pheL	cold shock protein associated with 30S ribosomal subunit/pheA gene leader peptide
	?	NC_000913_3_bme_pgi	2737539 =	35 (0.810)					intergenic (+44/‑60)	raiA/pheL	cold shock protein associated with 30S ribosomal subunit/pheA gene leader peptide
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAATTGATCAACAAGCTGGAACGGCAGCTCAATAAACTGCAGCACAAAGGCGAAGCACGTCGTGCCGCAACATCGGTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACGGGTACTGTACTAAAGTCACTTAAGGAAACAAACATGAAACACATACCGTTTTTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGT  >  NC_000913_3_bme_pgi/2737379‑2737665                                                                                                                                             |                                                                                                                                                   gAATTGATCAACAAGCTGGAACGGCAGCTCAATAAACTGCAGCACAAAGGCGAAGCACGTCGTGCCGCAACATCGGTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGccg                                                                                                                                            >  1:376705/1‑148 (MQ=255) gAATGGATCAACAAGCTGGAACGGCAGCTCAATAAACTGCAGCACAAAGGCGAAGCACGTCGTGCCGCAACATCGGTGAAAGACGCCAACTTCGACGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGGGTGTATCGCCAACGCGCCt                                                                                                                                            >  2:141172/1‑149 (MQ=255)   aTTGCTCAACAAGCTGGAACGGCAGCTCAATAAACTTCAGCACCAAGGCGAAGCTCGTCGTGCCGCAACATCGGTGAAAGATGTCAACTTCGTCGTAGTAGTTCAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTc                                                                                                                                          <  2:588377/149‑1 (MQ=255)         caacaaGCTGGAACGGCAGCTCAATAAACTGCAGCACAAAGGCGAAGCACGTCGTGCCGCAACATCGGTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGgcgc                                                                                                                                    <  1:306488/149‑1 (MQ=255)             aaGCTGGAACGGCAGCTCAATAAACTGCAGCACAAAGGCGAAGCACGTCGTGCCGCAACATCGGTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGttt                                                                                                                                <  2:97307/149‑1 (MQ=255)             aaGCTGGAACGGCAGCTCAATAAACTGCAGCACAAAGGCGAAGCACGTCGTGCCGCAACATCGGTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGttt                                                                                                                                <  1:138809/149‑1 (MQ=255)              aGCCGGAACGGCAGCCCAATAAACTGCAGCACAAAGGCGAAGCACGTCGTGCCGCAACATCGGTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGtttt                                                                                                                               <  1:335190/149‑1 (MQ=255)                       ggCAGCTCAATAAACTGCAGCACAAAGGCGAAGCACGTCGTGCCGCAACATCGGTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACa                                                                                                                      <  1:233876/149‑1 (MQ=255)                        gCAGCTCAATAAACTGCAGCACAAAGGCGAAGCACGTCGTGCCGCAACATCGGTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAg                                                                                                                     >  2:38408/1‑149 (MQ=255)                                aTAAACTGCAGCAGAAAGGCGAAGCAGGTCGTGCCGCAACATCGGTGAAAAACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGGGTGTATCGCCAACGCGCCTTCGGGCGGGTTTTTTGTTGATAGCGTGaaac                                                                                                             >  1:664044/1‑148 (MQ=255)                                aTAAACTGCAGCACAAAGGCGGAGCACGTCGTGCCGCAACATCGGTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGaaaa                                                                                                             <  2:558223/149‑1 (MQ=255)                                 tAAACTGCAGCACAAAGGCGAAGCACGTCGTGCCGCAACATCGGTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAAc                                                                                                            >  1:249179/1‑149 (MQ=255)                                        cagcaCAAAGGCGAGGCACGTCGTGCCGCAACATCGGTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACgg                                                                                                     <  1:390016/149‑1 (MQ=255)                                         agcaCAAAGGCGAAGCACGTCGTGCCGCAACATCGGTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACggg                                                                                                    <  2:235402/149‑1 (MQ=255)                                                aGGCGAAGCACGTCGTGCCGCAACATCGGTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTGCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACGGgtactgta                                                                                             >  2:38024/1‑149 (MQ=255)                                                    gAAGCACGTCGTGCCGCAACATCGGTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACGGGTACTGTACTaa                                                                                         <  1:327372/149‑1 (MQ=255)                                                     aaGCACGTCGCGCCACAACATCGGTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACGGGTACTGTACTaaa                                                                                        <  2:329883/149‑1 (MQ=255)                                                       gCACGTCGTGCCGACACATCGGTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACGGGTACTGTACTAAAGt                                                                                      <  1:627703/149‑1 (MQ=255)                                                                        aTCGGTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTCATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACGGGTACTGTACTAAAGTCACTTAAGGaaacaaac                                                                     <  1:603880/149‑1 (MQ=255)                                                                         gctgTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACGGGTACTGTACTAAAGTCACTTAAGGAaacaaaca                                                                    <  1:181425/146‑1 (MQ=255)                                                                            gTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACGGGTACTGTACTAAAGTCACTTAGGGAAACAAACATGa                                                                 >  1:192181/1‑149 (MQ=255)                                                                                 aGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACGGGTACTGTACTAAAGTCACTTAAGGAAACAAACATGAAacac                                                            >  1:383895/1‑149 (MQ=255)                                                                                     gCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGAGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACGGGTACTGTACTCAAGTCCCTTAAGGAAACAAACATGAACCACATAc                                                        >  2:306671/1‑149 (MQ=255)                                                                                            tcgtcgAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACGGGTACTGTACTAAAGTCACTTAAGGAAACAAACATGAAACACATACCGttttt                                                 <  1:676696/149‑1 (MQ=255)                                                                                                cgAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACGGGTACTGTACTAAAGTCACTTAAGGAAACAAACATGAAACACATACCGTTTttcttc                                             <  1:232434/149‑1 (MQ=255)                                                                                                              aagaGTAGCCCTTGATATTGATTGTATCGGCAACGCGCCTTCGGGCGCGTTGTTTGTTGACAGCGTTAAAACAGTACGGGTACTGTACTACAGTCACTTAAGGTAACAAACATGAATCACATATCGCTTCTCTTCGCATTCTTTTTTAc                               <  2:354410/149‑1 (MQ=255)                                                                                                                     gtCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGAGAGCGTGAAAACAGTACGGGTACTGTACTAAAGTCACTTAAGGAAACAAACATGAAACACATACCGTTTTTCTTCGCATTCTTTTTTACCTTcccc                        >  1:529674/1‑149 (MQ=255)                                                                                                                      tCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACGGGTACTGTACTAAAGTCACTTAAGGAAACAAACATGAAACACATACCGTTTTTCTTCGCATTCTTTTTTACCTTCCCCt                       <  1:173557/149‑1 (MQ=255)                                                                                                                        cTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCG‑TTTTTGTTGACAGCGTGAAAACAGTACGGGTACTGTACTAAAGTCACTTAAGGAAACAAACATGAAACACATACCGTTTTTCTTCGCATTCTTTTTTACCTTCCCCTGaa                    <  2:422830/149‑1 (MQ=255)                                                                                                                             tatTGAGTGTACCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACGGGTACTGTACTAAAGTCACGTAAGGAAACAAACATGAAACACATACCGTTTTTCTTCGCATTCTTTTTTACCTTCCCCTGAATggg                <  1:141172/149‑1 (MQ=255)                                                                                                                                 taGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACGGGTACTGTACTAAAGTCACTTAAGGAAACAAACATGAAACACATACCGTTTTTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGc            <  1:541913/148‑1 (MQ=255)                                                                                                                                      tATCGCCAACGCGCCTTCGGGTGTGTTTTTTGTTGACAGCGTGAAACCAGGACGGGTACTGTACTTAAGTCTCTTAACGAAACAAACATGAATCACATCCCGTTTTGCGTCGCATTTTTTTTTACCTTTTCCTGAATGGGAGGCGTTtc       <  2:432221/149‑1 (MQ=255)                                                                                                                                        tCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACGGGTACTGTACTAAAGTCACTTAAGGAAACAAACATGAAACACATACCGTTTTTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTtcgt     >  1:740672/1‑149 (MQ=255)                                                                                                                                           ccAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACGGGTACTGTACTAAAGTCACTTAAGGAAACAAACATGAAACACATACCGTTTTTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTcgtcgt  <  1:26280/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                   GAATTGATCAACAAGCTGGAACGGCAGCTCAATAAACTGCAGCACAAAGGCGAAGCACGTCGTGCCGCAACATCGGTGAAAGACGCCAACTTCGTCGAAGAAGTTGAAGAAGAGTAGTCCTTTATATTGAGTGTATCGCCAACGCGCCTTCGGGCGCGTTTTTTGTTGACAGCGTGAAAACAGTACGGGTACTGTACTAAAGTCACTTAAGGAAACAAACATGAAACACATACCGTTTTTCTTCGCATTCTTTTTTACCTTCCCCTGAATGGGAGGCGTTTCGTCGT  >  NC_000913_3_bme_pgi/2737379‑2737665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.