New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_bme_pgi = 39447136 (0.780)4 (0.100) 4/258 6.1 10.9% intergenic (+53/‑35) yaiT/yaiV pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator
?NC_000913_3_bme_pgi = 394475 33 (0.790)intergenic (+57/‑31) yaiT/yaiV pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTCCAGTGATGTC  >  NC_000913_3_bme_pgi/394329‑394622
                                                                                                                                                  |                                                                                                                                                   
ttCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAATTAATGCTCGTCAAGGAttt                                                                                                                                                   >  1:531012/1‑149 (MQ=255)
     cgcCTATACCGATGCTAACTACCTCGGTGGTGGTGACGCAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTCACgg                                                                                                                                              >  2:710435/1‑149 (MQ=255)
        cTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCa                                                                                                                                           <  1:784457/149‑1 (MQ=255)
                  gCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATACTGCCCGTCAAGGATTTGACGGGCATTACTGCaaa                                                                                                                                 <  2:800132/149‑1 (MQ=255)
                    tAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAgg                                                                                                                               >  1:523765/1‑149 (MQ=255)
                        tACCTCGGTGGTGGTGACTCAGATCAAGACTGGTCCGCGAACGTGGGTTTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGAcgc                                                                                                                           <  2:531012/149‑1 (MQ=255)
                         aCCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGAcgcg                                                                                                                          >  2:639772/1‑149 (MQ=255)
                           ctccctggtcgttACGTAGATCAAGACTGGTCCTCGCACGTGGGTGTTAAATCTACCTGGTAATATTCTTCTCTCCGAAGAAATACTGGTAATTTAATCTAAATTATGCCCGTCCGTGATTTTATGGGCATTACTGCAAAGGACGcaca                                                                                                                        >  2:392102/6‑149 (MQ=255)
                           cTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACggg                                                                                                                                             <  2:783150/128‑1 (MQ=255)
                           cTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACggg                                                                                                                                             >  1:783150/1‑128 (MQ=255)
                                    ggtgACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTACTCTAAATAATGCCCGTCAAGGATTTTACGGGCATTACTGCAAAGGACGCGCCAAGGTTAtt                                                                                                               >  2:405827/1‑148 (MQ=255)
                                     gtgACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGCAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCt                                                                                                              >  1:771669/1‑149 (MQ=255)
                                      cgACTTAGATAAAGACTGGTCCGCGAACGTGGTTGTTAAATATGCCTGGAAATATGAATAGCGCCCAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTg                                                                                                             <  1:392102/148‑1 (MQ=255)
                                          gTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATCCTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGCCGCGAAAATGTTATCTGTatt                                                                                                         >  2:239506/1‑147 (MQ=255)
                                              aTCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAGTTTAATCTAAATAATGCCCGTCAAGGATTTGACTGGCATTACTGCAAAGGACGCGCAACTGTTATCTGTAGTCaaa                                                                                                     >  2:680602/1‑149 (MQ=255)
                                              aTCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTaaa                                                                                                     >  1:236218/1‑149 (MQ=255)
                                                      tGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCa                                                                                             <  1:467681/149‑1 (MQ=255)
                                                         tCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTGAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTAACTCTCGTTAAACCTCTTCAGGa                                                                                          >  2:360883/1‑149 (MQ=255)
                                                              gAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTg                                                                                     <  1:438239/149‑1 (MQ=255)
                                                               aaCGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTgg                                                                                    <  2:243873/149‑1 (MQ=255)
                                                                 cGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTa                                                                                  <  2:469324/149‑1 (MQ=255)
                                                                             aaataCCTGGTAATATTCTTCACTACGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACCGGCATTACTGCAAAGGACGCTCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAAt                                                                      <  1:775387/147‑1 (MQ=255)
                                                                                    tGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTc                                                               <  1:639772/149‑1 (MQ=255)
                                                                                     ggTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTcc                                                              >  1:98748/1‑149 (MQ=255)
                                                                                               tcgacaccGAAGAAAGTCGGGTAATTTACTCTAAATAAGGCCAGACAAGGATTTGGCGTGTAATACTGCAAAGGACGCGCAAGTTTTATCCGTAGGTATACCTCTTCAGGAATTTGGTAAGCGCGATAAATGTTTCTCCAGATACGCTa                                                    <  2:679771/143‑1 (MQ=255)
                                                                                                    tCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTACAAAGGACGCGCAAATATTAACTGTAGTAAACCCTCTTCAGGAGTTTGGGAAGCCCGAAAAATCATTGACCCAATACGGTAcgcga                                               >  2:4984/1‑148 (MQ=255)
                                                                                                    tCCGAAGAAAGACCGGTAATTTAATCTAAACAATCCCCGTCAAGGATTTTACCGGCATTACTTCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACgcgc                                               <  1:467629/149‑1 (MQ=255)
                                                                                                             aTACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGttt                                      >  1:8042/1‑149 (MQ=255)
                                                                                                                   gTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTcataat                                >  1:303990/1‑149 (MQ=255)
                                                                                                                       tttAATCTAAATAATGCCCGTCAAGGATTGGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGaaa                            <  1:28270/149‑1 (MQ=255)
                                                                                                                        ttAATCTAAATAATGCCCGTCAAGGATTCGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGaaaa                           <  1:224146/149‑1 (MQ=255)
                                                                                                                                     tGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCCCTTCGAGTTTAATAATGAAAAGCAAGTTATAttt              >  2:508484/1‑149 (MQ=255)
                                                                                                                                     tGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTCATCCGGGCTTTAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATAttt              <  1:792211/149‑1 (MQ=255)
                                                                                                                                       cccGTCAAGGATTTGACGGGCATCACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGGTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTc            <  2:649278/149‑1 (MQ=255)
                                                                                                                                        ccGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTcc           >  1:492303/1‑149 (MQ=255)
                                                                                                                                              tttaTTTGACGGGCAGTACTGCAAAGGACGCGTAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGGTACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTCCAGTGAt     <  2:805640/146‑1 (MQ=255)
                                                                                                                                              aGGATTTGTCGGGCATTACTGCTAATTACGTGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTCCAGTGAt     <  2:771669/149‑1 (MQ=255)
                                                                                                                                                 aTTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTCCAGTGATGTc  <  2:236218/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
TTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAGGATTTGACGGGCATTACTGCAAAGGACGCGCAAATGTTATCTGTAGTTAAACCTCTTCAGGAATTTGGTAAGCTCGATAAATGTTTGTCCAGATACGGTACGCGCTTCGAGTTTAATAATGAAAAGCAAGTTATATTTTCCAGTGATGTC  >  NC_000913_3_bme_pgi/394329‑394622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.