New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 4542691	41 (0.860)	9 (0.200)	9/266	4.2	19.9%	intergenic (+57/‑425)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
	?	NC_000913_3_bme_pgi	= 4542987	34 (0.760)					intergenic (+353/‑129)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAC  >  NC_000913_3_bme_pgi/4542549‑4542836                                                                                                                                               |                                                                                                                                                  ataCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGt                                                                                                                                             <  1:701450/149‑1 (MQ=255)  taCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAACGAAACAATATCCTAAACGAAAAATTAAAAAGAGAAGAGGTTTGAGTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAATCTGTc                                                                                                                                            <  1:243050/149‑1 (MQ=255)  taCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTc                                                                                                                                            <  1:732430/149‑1 (MQ=255)         aGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCa                                                                                                                                     >  1:447932/1‑149 (MQ=255)          gTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAACATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAAAAAATAAATACAAGACAATTGCGGCCAAACTGTCCatattaa                                                                                                                                    >  2:322392/1‑146 (MQ=255)                             cgtaTTATGGGAACGAAATCATCTCATCAACGCCACCTTAACAACAGAAACGGATTCATTTAACTTATTGGTAATAAAGTTAAAAAAACAAATAAATACAACACAATTGGCGCCAAACTGTCCATAACATAACTAAGGTACGTAttttt                                                                                                                 >  2:585139/4‑149 (MQ=255)                                               taatCGCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat                                                                                               <  1:307167/149‑1 (MQ=255)                                                    tcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaa                                                                                          >  1:60994/1‑149 (MQ=255)                                                         aaCGAAAAATAAAAAAGATAAAAGGTATGATATAATTTATTGATAATAAAGATAAAAAAAAAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa                                                                                     <  2:602594/149‑1 (MQ=255)                                                           cGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGACCAAACTGTCAATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACa                                                                                   >  2:369153/1‑149 (MQ=255)                                                            gAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaa                                                                                  >  1:141065/1‑149 (MQ=255)                                                            gAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACaa                                                                                  >  2:393630/1‑149 (MQ=255)                                                                  ttAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACATATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCa                                                                            >  1:545877/1‑149 (MQ=255)                                                                   tAAAAAGAAAAGAAGTTAGATTTAACTTATTGAAAAAAAAAAAAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCAt                                                                           <  2:156950/149‑1 (MQ=255)                                                                   caaaaaGAAAAGAAGTTTGATCTAACTTATTTATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCAt                                                                           <  1:322392/148‑1 (MQ=255)                                                                          agaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTg                                                                    <  1:85209/149‑1 (MQ=255)                                                                             agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt                                                                 <  2:141065/149‑1 (MQ=255)                                                                             agagGTTTGATTTAAATTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt                                                                 <  1:196410/149‑1 (MQ=255)                                                                                ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGat                                                              <  1:818064/149‑1 (MQ=255)                                                                                  tgtGATTTAACTTATGTATAATAAAATCAAAAAAAAAAATAAATAGAAGACAATTGGGGGCAAAATGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGatat                                                            <  2:529324/147‑1 (MQ=255)                                                                                           aCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAattat                                                   <  1:53276/149‑1 (MQ=255)                                                                                             ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAAGACAAAAAGCATCAAACTAATTGATATGTAAATTActt                                                 >  2:82212/1‑149 (MQ=255)                                                                                                ttGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTa                                              >  2:328244/1‑149 (MQ=255)                                                                                                ttGAGAAGAAATTTAAAAAAAAAAATAAATACAAGACAATAGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTa                                              <  2:545877/149‑1 (MQ=255)                                                                                                 tcaaaagaaaGTTAAAAAATCAAATAAAGAAAAGACAACTGGGTCCAAACTATACATATCATAAATAATTTACGTATTTTTTCTCAAGCATAAAAAAAATAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAt                                             <  2:581864/142‑1 (MQ=255)                                                                                                  gATAATAGAGTTAAAAAAACAAATAAATACAAGACAATTGGGGGCAAACTGTGCATATCATAAATAAGTTACGTAATTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTAtt                                            <  2:683149/149‑1 (MQ=255)                                                                                                    taataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCtttttt                                          >  1:713337/1‑147 (MQ=255)                                                                                                       taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTg                                                                    <  1:351074/120‑1 (MQ=255)                                                                                                       taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTg                                                                    >  2:351074/1‑120 (MQ=255)                                                                                                        aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGATACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaat                                      >  1:291004/1‑149 (MQ=255)                                                                                                                aaaaaCAAATAAATACAAGACAATTGGGGCCAAAATGTCAATATCATAAAAAAGATACGTATTTATTCTTCATCATAGATATATTAAAAAACGACAAAAAGCTTCTCACTGGTTGATAAGTAATATATTCTTATTTTTaattcatatgc                              >  2:207430/1‑145 (MQ=255)                                                                                                                 aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcac                             <  1:393630/149‑1 (MQ=255)                                                                                                                 aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcac                             <  1:118512/149‑1 (MQ=255)                                                                                                                 aaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTcac                             >  2:732382/1‑149 (MQ=255)                                                                                                                   aaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTAACAt                           >  1:835195/1‑149 (MQ=255)                                                                                                                        ataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTCTTTTTTCTCAAGCATAAAAATATTAAAAAACGACACAAAGACTCTAACTATTTGATCTGTAAATTATTTCTCTTGTAACTTATTTTCACATCACCt                      >  2:231696/1‑149 (MQ=255)                                                                                                                                 aGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTatat             <  1:233334/149‑1 (MQ=255)                                                                                                                                       ttGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGCAAAg       >  2:543183/1‑149 (MQ=255)                                                                                                                                          gggCCAAACTGTCCATATCATAAATAAGATACGTATTTTATCTCAAGCCTAAAAATAATAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCAATTGTAAATAAATTTCCCATCACCTCCCCTATATGTAAAGCTa    >  2:74372/1‑149 (MQ=255)                                                                                                                                            gCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAc  >  1:751861/1‑149 (MQ=255)                                                                                                                                            gCCAAACTGTCCATATCATAAATAAGTTACATATTTTTTCACAAGCATAAAAATATTAAAAAAAGACAAAAAGAATCTAACTGTTTGATATGTAAATTATTTCACTTGTAAATTAATTTCACATCACCTACACTATACGGAAAGCTAAc  >  2:63237/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                  ATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAAC  >  NC_000913_3_bme_pgi/4542549‑4542836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.