| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 1287692 | 197 (0.810) | 11 (0.080) +CCGCTTCCCGATAAGGGAGCAGGCCAGTAAAAAGCATTACCCCGT |
6/106 | 17.4 | 8.4% | intergenic (‑70/+90) | tyrT/purU | tRNA‑Tyr/formyltetrahydrofolate hydrolase |
| ? | NC_000913_3_bme_pgi | 4175472 = | 252 (1.030) | noncoding (1/85 nt) | tyrU | tRNA‑Tyr | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGCGGGGCGCATCATATCAAATGACGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_bme_pgi/1287663‑1287692‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCACAGACTTCGAAGGTTCGAATCCTTCCCCCACCAC > NC_000913_3_bme_pgi/4175472‑4175554 ||||||||||||||||||||||||||||||||||||||||||||| AGCGGGGCGCATCATATCAAATGACGCG‑‑CCGCTTCCCGATAAGGGAGCAGGCCAGTAAAAAGCATTACCCCGTGGTGGGGTTCCCGAGCGGCCAAAGG > 2:3359286/1‑98AGCGGGGCGCATCATATCAAATGACGCG‑‑CCGCTTCCCGATAAGGGAGCAGGCCAGTAAAAAGCATTACCCCGTGGGGGGGTTCCCGAGCGGC > 1:3425917/1‑92 GCGGGGCGCATCATATCAAATGACGCG‑‑CCGCTTCCCGATAAGGGAGCAGGCCAGTAAAAAGCATTACCCCGTGGTGGGGTTCCCGAGCGGCCAAAGGGAG > 1:5332022/1‑100 CGGGGCGCATCATATCAAATGACGCGCCCCGCTTCCCGATAAGGGAGCAGGCCAGTAAAAAGCATTACCCCGTGGTGGGGTTCCCGAGCGGCCAAAGG > 1:1513131/1‑98 GGGGCGCATCATATCAAATGACGCGCCGCGCTTCCCGATAAGGGAGCAGGCCAGTAAAAAGCATTACCCCGTGGTGGGGTTCCCGAGCGGCCAAAGGGAG > 1:4599279/1‑100 GGGGCGCATCATATCAAATGACGCGCCCCGCTTCCCGATAAGGGAGCAGGCCAGTAAAAAGCATTACCCCGTGGTGGGGTTCCCGAGCGGCCAAAGGGAG > 1:879161/1‑100 GGGGCGCATCATATCAAATGACGCGCCCCGCTTCCCGATAAGGGAGCAGGCCAGTAAAAAGCATTACCCCGTGGTGGGGTTCCCGAGCGGCCAAAGG > 2:1329304/1‑97 GGGCGCATCATATCAAATGACGCGCCCCGCTTCCCGATAAGGGAGCAGGCCAGTAAAAAGCATTACCCCGTGGTGGGGTTCCCGAGCGGCCAAAGGGAG > 1:4794610/1‑99 GGGCGCATCATATCAAATGACGCGCCCCGCTTCCCGATAAGGGAGCAGGCCAGTAAAAAGCATTACCCCGTGGTGGGGTTCCCGAGCGGCCAAAGGGAG > 1:790476/1‑99 GGGCGCATCATATCAAATGACGCGCCCCGCTTCCCGATAAGGGAGCAGGCCAGTAAAAAGCATTACCCCGTGGTGGGGTTCCCGAGCGGCCAAAGGGAG > 2:2443522/1‑99 GGCGCATCATATCAAATGACGCGCCCCGCTTCCCGATAAGGGAGCAGGCCAGTAAAAAGCATTACCTCGTGGTGGGGTTCCCGAGCGGCCAAAGG > 2:1547611/1‑95 AGCAGGCCAGTAAAAAGCATTACCCCGTGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTCAATCTGCCGTCACCGACTTCGAAGGTTCGAATCC > 2:461938/1‑99 CCAGTAAAAAGCATTACCCCGTGGTGGGGTTCCCGAGCGGCCAAAGGGcg > 2:3188257/1‑48 CCAGTAAAAAGCAGTACCCCGTGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAG < 2:2646293/53‑1 AAAAAGCATTACCCCGTGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCACCGACTTCGAAGGTTCGAATCCTTCCCCCACCAC > 2:4051803/1‑100 CCGTGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTA < 2:4487257/41‑1 ||||||||||||||||||||||||||||||||||||||||||||| AGCGGGGCGCATCATATCAAATGACGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_bme_pgi/1287663‑1287692‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAATCTGCCGTCACAGACTTCGAAGGTTCGAATCCTTCCCCCACCAC > NC_000913_3_bme_pgi/4175472‑4175554 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |