| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 1196374 | 235 (1.110) | 28 (0.170) +CTCTCCATGTGTTAAATATTGA |
14/152 | 16.8 | 13.2% | intergenic (+1/+493) | icd/ymfD | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913_3_bme_pgi | = 1211623 | 239 (1.120) | intergenic (+46/+57) | icdC/iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_bme_pgi/1196319‑1196374‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACGGGCGTGTTATACGCCCGTTTCAATATTTAACACATGGAGAGATTACATGTTTTCGATGATCGCTTCACCAAACTCTGAACATTTCAGCAG < NC_000913_3_bme_pgi/1211623‑1211530 |||||||||||||||||||||| CGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGT < 1:4567250/100‑1CGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGT < 1:4206495/100‑1CGCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGT < 1:3555534/100‑1 GCTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTT < 1:1425278/100‑1 CTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTT < 1:1617385/100‑1 CTAAGCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTT < 1:3734152/100‑1 agCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTCAA < 2:510830/98‑1 agCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTCAA < 1:1534459/98‑1 agCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTCAA < 1:2953539/98‑1 agCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTCA < 2:1998248/97‑1 agCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTCA < 1:4771648/97‑1 agCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTC < 1:1363683/96‑1 agCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTC < 1:4615539/96‑1 agCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTC < 1:377895/96‑1 agCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTC < 1:3319654/96‑1 agCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTC < 1:2468410/96‑1 agCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTC < 1:2095487/96‑1 gCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAGCATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTCAAT < 1:5172293/99‑1 gCTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAGCATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTCAAT < 1:5183908/99‑1 gCTGCTGAAATGTTCAGAGGTTGGTGAGGCGATCATCGAAAACATGTAATCTCCCCGTGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTATCAAT < 2:1504682/99‑1 CTGCTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTCAATA < 1:2022601/100‑1 CTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTCAATATTT < 1:106347/100‑1 CTGAAATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTCAATAT < 1:2494910/98‑1 CTGAAATGTTCAGAGTTGGGTGAAGCGATCATCTAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTCAATAT < 2:2829319/98‑1 AATGTTCAGAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTCAATATTTAACA < 1:574565/100‑1 GAGTTTGGTGAAGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATAAAACAACGGGCGTGTTATACGCCCGTTTCAATATTTAACACATGGAGA < 1:3156885/100‑1 aaGCGATCATCGAAAACATGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTCAATATTTAACACATGGAGAGATTACATG < 2:835403/97‑1 TGTAATCTCTCCATGTGTTAAATATTGAAACGGGCGTGTTATACGCCCGTTTCAATATTTAACACATGGAGAGATTACATGTTTTCGATGATCGCTTCAC < 1:5243720/100‑1 TGAAACGGGCGTATAACACGCCCGCTTCAATATTTAACACATGGAGAGATCACATGTTTTCGATGATCGCTTCACCAAACTCTGAACATTTCAGCAG > 2:1991404/1‑97 |||||||||||||||||||||| CGCTAAACTGCTGAAATGTTCAGAGTTTGGTGACGCGATCATCGAAAACATGTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_bme_pgi/1196319‑1196374‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACGGGCGTGTTATACGCCCGTTTCAATATTTAACACATGGAGAGATTACATGTTTTCGATGATCGCTTCACCAAACTCTGAACATTTCAGCAG < NC_000913_3_bme_pgi/1211623‑1211530 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |