New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 3653229	NA (NA)	50 (1.130)	44/284	0.1	96.2%	intergenic (‑31/‑2)	insH1/yhiS	IS5 transposase and trans‑activator/pseudogene
	?	NC_000913_3_bme_pgi	3992704 =	2 (0.040)					coding (1552/2547 nt)	cyaA	adenylate cyclase

AGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGCGGAAATT  >  NC_000913_3_bme_pgi/3653090‑3653374                                                                                                                                            |                                                                                                                                                  aGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGa                                                                                                                                          <  1:746582/149‑1 (MQ=31)   aacaTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCCCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACTCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGAATTGTTCGCACCTTCCTTAGGTGaca                                                                                                                                        <  2:574783/146‑1 (MQ=255)                  gTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATa                                                                                                                         >  1:451317/1‑149 (MQ=255)                           ctcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACAcc                                                                                                                <  1:115779/147‑1 (MQ=255)                                  tgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTACATAAAGAACACCCTAccccc                                                                                                        >  2:568787/1‑149 (MQ=255)                                         ttCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATta                                                                                                  <  1:201269/149‑1 (MQ=255)                                          tCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACCCCCTACCCCCAAATtat                                                                                                 >  2:342053/1‑149 (MQ=255)                                           cACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTACATAAAGAACACCCTACCCCCAAATtatat                                                                                               <  1:568787/149‑1 (MQ=255)                                               gTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTCCCCGCAAATTATATaaa                                                                                            >  1:749992/1‑149 (MQ=255)                                                tCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAg                                                                                           <  2:451317/149‑1 (MQ=255)                                                          tAACTTCATGACTCACGATGGACTCTGTTCTATGACTCCGGATGACAAACATGATGTCATATCAGGGACTTGTTCGCACGTGCCTTAGGTGACACTATTTTTTTAGATAAAGAACGCCCTCCCTCCCAATTCTATAAAGATGCACAata                                                                                 <  2:633278/149‑1 (MQ=18)                                                                      tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATGAAGATGGACAATACCTTGacaaaaa                                                                     >  1:696295/1‑147 (MQ=255)                                                                      tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGacaaaca                                                                     >  1:363640/1‑149 (MQ=255)                                                                        atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTGGGACCGTCCTTAGGTGCCGCTAATTTTTTACATAAAGAACCCCCTACCCCCAAATTATATAACGATGGACAATATCTTGAcaaacaaa                                                                   >  1:760083/1‑149 (MQ=25)                                                                        atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAACGAACACCCTACCCCCAAATTATATAAAGATGGTCGATATCTGGAcacacaaa                                                                   >  1:295807/1‑149 (MQ=25)                                                                             gaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGaa                                                              <  1:454558/149‑1 (MQ=255)                                                                             gaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGaa                                                              <  2:83452/149‑1 (MQ=255)                                                                               aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAgg                                                            <  1:397938/149‑1 (MQ=255)                                                                                cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCtt                                                                             <  2:88108/131‑1 (MQ=255)                                                                                cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCtt                                                                             >  1:88108/1‑131 (MQ=255)                                                                                 ccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGtt                                                          >  1:437710/1‑149 (MQ=255)                                                                                  ccgTTCTAGGGCTCCATATGACAAACATGAATTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATGGAGATGTACAATATCTTGACAAACAAATCGAAGGttt                                                         <  2:363640/147‑1 (MQ=37)                                                                                        tATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCAACCCCCAAATTATAAAAAGATGGACAATATCTTGACAAACAAATCGAGAGTTTaaattc                                                   >  2:251610/1‑144 (MQ=37)                                                                                                 aGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACattatt                                          >  1:248732/1‑149 (MQ=255)                                                                                                           cagggtctcATAGCAGGGTCGTGTGCGCGCGTTCCTGAGGTGGCACTATTTTGTGACAGAGAGAACACCCTGCCCCCAAATTAGATAAAGATGGACAATATCTTGACAAACAACTCGAAGGTTTATTTTCAAGATTATTAACCATTAAt                                <  2:234017/144‑1 (MQ=255)                                                                                                                tgtcAGATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAACTTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACaa                           >  2:136234/3‑149 (MQ=255)                                                                                                                tctcATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCGCCAAATTATATAAAGATGGACAATATCTTTACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCGTTATTGACaa                           >  2:117655/1‑149 (MQ=255)                                                                                                                         aGGGACTTGTTCGCACATTCCTTAGGAGAAACTATTTTTTTACATCAAGGACACCCTACACCGAAATTATATAAAGATGGAAGATTACTTGACAAACAAAGCGAAGATTAATTTTCAACATTATTAACCATTAATGACAACCTTTTACg                  >  2:699698/1‑149 (MQ=255)                                                                                                                                     gCACCTTCCTTAGGTGACACTCTTTTTTTACATAAAGAACACCCTACCCCCGAATTATATAAGGATGGAGAATATGTTGACAAACAAATCGAAGGTTTATTTTCACTATTATTAACCATTAATGACACCCTTTTACGACCAAAAGTGGa      >  1:91701/1‑149 (MQ=255)                                                                                                                                       aCCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTCTTACGAGCAAAAGCGGaaa    >  1:674849/1‑149 (MQ=255)                                                                                                                                         cttccttAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGCGGAAAtt  <  1:342053/149‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                  AGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGCGGAAATT  >  NC_000913_3_bme_pgi/3653090‑3653374

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.