New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	2775873 =	37 (0.830)	5 (0.120)	5/270	5.4	12.4%	intergenic (+57/‑46)	ypjI/yfjX	pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related/CP4‑57 prophage; putative antirestriction protein
	?	NC_000913_3_bme_pgi	2775896 =	36 (0.860)					intergenic (+80/‑23)	ypjI/yfjX	pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related/CP4‑57 prophage; putative antirestriction protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTTGGCACCATCCCGCA  >  NC_000913_3_bme_pgi/2775751‑2776043                                                                                                                                                  |                                                                                                                                                    gCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGttttt                                                                                                                                                  >  1:602615/1‑149 (MQ=255)   cGGTGAATGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTa                                                                                                                                                <  2:46627/149‑1 (MQ=255)   cGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTa                                                                                                                                                <  1:90572/149‑1 (MQ=255)           gTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGga                                                                                                                                        <  2:275101/149‑1 (MQ=255)           gTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGga                                                                                                                                        <  2:602615/149‑1 (MQ=255)                  ccGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATAc                                                                                                                                 <  1:392338/149‑1 (MQ=255)                    gCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAACCGCGCTTTATTACCCCATACGCCAGCCATCGCCGCTGGCGATTTATATTCACGGAGACATAccc                                                                                                                               >  1:707707/1‑149 (MQ=255)                      tataTCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACCTTTCACCTTCCCAAACGAGCTTTATTACCTCATAAGACAGCTAACGCCGCTGGCGCTTTTTCTGCACGGAGACATACCCac                                                                                                                             >  2:276813/1‑148 (MQ=255)                               aGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAacaca                                                                                                                    <  1:452440/149‑1 (MQ=255)                                ggTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCCCGGAGAAATACCCATCACAccacag                                                                                                                   >  2:121434/1‑149 (MQ=255)                                 gTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTGCGAATCATTTACCAGCAACATTTCACCTTCCGAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAacacaga                                                                                                                  >  1:361750/1‑149 (MQ=255)                                 gTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAacacaga                                                                                                                  <  2:587446/149‑1 (MQ=255)                                   cagggcgccGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCCCCTTCCCAAACGCGCTTTATTACCTCATACGTCCGGCATCGGCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAacacagaca                                                                                                                <  2:198674/142‑1 (MQ=38)                                    aGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGCACTACCCATGACAacacagacac                                                                                                               >  1:694571/1‑149 (MQ=255)                                    aGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTAACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTGACGGAGACATGCCCATGCCAgaacagacac                                                                                                               >  1:97366/1‑149 (MQ=38)                                        aTCCGCACCGCCACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTa                                                                                                           <  2:182920/149‑1 (MQ=255)                                         tCCGCACCGATAACTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTAc                                                                                                          <  1:423461/149‑1 (MQ=255)                                             cACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGAcc                                                                                                      <  2:531147/149‑1 (MQ=255)                                               ccGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATTACAACACAGACACAGTACGACCTc                                                                                                    <  1:669599/149‑1 (MQ=255)                                                cGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCGCGGAGACATACCCATGACAacacagacaca                                                                                                              <  2:230335/138‑1 (MQ=255)                                                cGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCAACTTCCCAAACGCGCTTTATCACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCg                                                                                                   >  1:265262/1‑149 (MQ=255)                                                cGACACCCTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCGCGGAGACATACCCATGACAacacagacaca                                                                                                              >  1:230335/1‑138 (MQ=255)                                                   cacCCTCCCCCGCTGACTCCGAATCAGTTACCAGCTACATTTCACCTTCCCACACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTAc                                                                                                <  2:752294/149‑1 (MQ=255)                                                         cccccGCTGACTCCGAATCATTTACCACCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACCCTGACACACTACGCGCTCGTACCCCCTa                                                                                          >  2:289697/1‑149 (MQ=37)                                                                            aTTTACCAGCAACATTTCACCTTCCCAAACGCGCGCTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGCATttgagtt                                                                       >  1:746783/1‑149 (MQ=255)                                                                                                  tCCCAAACGCGCTTTAATACCTCATACGCCAGCCATCGCCGGTTCCGGTGTTTATTAACGGAACCACGCCAAATACAACACAGACACAGTACGACCTCGTACCCGCTCACGGATCCGAATTTGAGTTCAGCGTACCGCCCGTACCCCAt                                                 >  2:164873/1‑149 (MQ=255)                                                                                                                      cTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTg                             >  2:77351/1‑149 (MQ=255)                                                                                                                      cTCATACGCCAGCCATCGCCGCTGGCGTTTTTTAAACAGGGGGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTg                             <  1:144117/149‑1 (MQ=255)                                                                                                                         aTACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATCTCCGCCTCTGGcc                          >  1:64020/1‑149 (MQ=255)                                                                                                                          tACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACg                                                                                       >  2:495375/1‑87 (MQ=255)                                                                                                                          tACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACg                                                                                       <  1:495375/87‑1 (MQ=255)                                                                                                                             gccagccaTCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCgcag                      >  2:598517/1‑149 (MQ=255)                                                                                                                              ccagccaTCGCCGCTGGCGTTTTTTATTCACGGAGACATACCAATGACAACACAGCCACCGGACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAACATATCCGCTTCTGGCCgcagc                     >  1:571346/1‑149 (MQ=25)                                                                                                                                    aTCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTTg               <  1:630049/149‑1 (MQ=255)                                                                                                                                      cgccgcTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTTGGc             <  1:230278/149‑1 (MQ=255)                                                                                                                                      cgccgcTGGCGTTTTTTATTCACCCAGACAGACCCATGACAACACAGACACAATACGACCTCGTACCCGCCACCGGATCCGAGTTTAAGATGACCGTAACGCAGCTACCCGATGAACAGCATATCCCCTTCTGGCCACACACCTTTGGc             >  2:90259/1‑149 (MQ=255)                                                                                                                                            cggCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTTGGCACCATc       <  1:121434/148‑1 (MQ=255)                                                                                                                                              gCGTGTTTTATGCTCGGATACATACCCATGACACCACAGACATAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATTAACAGCATATCCGCTTCTTGCTGCAGCACTTTGGCACCATccc     <  2:679225/149‑1 (MQ=255)                                                                                                                                                 ttttttATTCACGGACACAAACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTTGGCACCATCCCGCa  <  1:276813/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTTGGCACCATCCCGCA  >  NC_000913_3_bme_pgi/2775751‑2776043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.