New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	3895222 =	29 (0.960)	3 (0.110)	3/264	4.2	10.6%	intergenic (+4/+50)	chrR/adeP	chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
	?	NC_000913_3_bme_pgi	3895257 =	24 (0.860)					intergenic (+39/+15)	chrR/adeP	chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGGAGATAAAGCCCAGCGCGATACC  >  NC_000913_3_bme_pgi/3895117‑3895403                                                                                                                                             |                                                                                                                                                   gTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTa                                                                                                                                            >  1:519542/1‑149 (MQ=255)          cAAACCGGAGAGGTTGTTGGTCAGGGTACGCTGGACCACCTGACTGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGAGCTAAAGAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTAGCGATTTTa                                                                                                                                   <  1:406395/149‑1 (MQ=255)          cAAACCGGAGAAGTGATTGATCAGTGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTa                                                                                                                                   <  2:487558/149‑1 (MQ=255)          cAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTTGCCGCATTTGGTGAGTTTATTCAGCGAGTTAAGTTCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTa                                                                                                                                   <  1:206793/149‑1 (MQ=255)           aaacgcgagaTGTGATTGAGCAGGGTACGCTGGACCACCTGACGGGGCACTTCCGCTGGCGGGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAg                                                                                                                                  <  1:123730/143‑1 (MQ=255)                       tgattgatCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAAATAATTCAGCGAATTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTGGGGAGCGTCGATa                                                                                                                      >  1:449873/1‑149 (MQ=255)                             atCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACa                                                                                                                >  1:268134/1‑149 (MQ=255)                                       gCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATCTTAGTGAGCGTCGATAAAAACCATCTTCAGGa                                                                                                      >  2:210454/1‑149 (MQ=255)                                           gACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCTAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATaaa                                                                                                  <  2:160250/149‑1 (MQ=255)                                                gcgcctcGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAAcagca                                                                                             >  2:469531/7‑149 (MQ=255)                                                      cGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCaa                                                                                       <  1:469531/149‑1 (MQ=255)                                                       gggCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGAGTTTAGTGAGCGTCGATAAAACAAATATTCAGGATAAACAGCAGCGCAAc                                                                                      >  2:26240/1‑149 (MQ=255)                                                                 ccGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACg                                                                            >  2:13940/1‑149 (MQ=255)                                                                   gCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCa                                                                          >  1:412750/1‑149 (MQ=255)                                                                           tgggtgtATTAAGCGTGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTa                                                                  <  2:188619/143‑1 (MQ=255)                                                                           tGAGTTTATTCAGCGAGTTAATATCCAAATAAAAAACCCGCCAGCAATCATGCCTGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTa                                                                  <  1:496473/149‑1 (MQ=255)                                                                                  aTTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCACCGATGATTACGCACGGGCTTAGATCACg                                                           <  2:519542/149‑1 (MQ=255)                                                                                      aGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGa                                                       <  2:215524/149‑1 (MQ=255)                                                                                       gCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGAc                                                      >  1:301714/1‑149 (MQ=255)                                                                                                 aTCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGAACACGCAGACGTCCGGGAcc                                            >  2:24554/1‑149 (MQ=255)                                                                                                          aaaaaCCCGCCAGAAATAATGGATGGCGGGTTTTGAACGCGCTAGGGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTtcat                                   <  2:284997/149‑1 (MQ=255)                                                                                                                       cactCATGAATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGgag                      <  1:230770/146‑1 (MQ=255)                                                                                                                        aaTCACGCATGGCGAGTTTTTAACGCGCCATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGgaga                     <  1:141660/149‑1 (MQ=255)                                                                                                                          tgattgctgGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGGAGATa                   >  1:342495/8‑149 (MQ=255)                                                                                                                                atgGCGGGGTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATGACGCAGACGTCCGGTACCGATTTGCATCACGCAGTAGGAGACAAAGccc             >  2:159571/1‑149 (MQ=255)                                                                                                                                       gTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGGAGATAAAGCCCAGCGCGa      <  1:516501/149‑1 (MQ=255)                                                                                                                                           tcaaCGCGCTATCGATTTTAGTGAGCGACGATAAAGACAATGCTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGAGCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGGAGATAAAGCCCAGCGCGATAcc  <  2:63158/147‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                   GTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCATCACGCAGTAGGAGATAAAGCCCAGCGCGATACC  >  NC_000913_3_bme_pgi/3895117‑3895403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.