| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 1207805 | 7 (0.230) | 19 (0.700) | 16/256 | 0.8 | 77.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_bme_pgi | = 1209602 | 5 (0.190) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
CACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATG > NC_000913_3_bme_pgi/1209454‑1209745 | cacGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCACCAGGTAATGCagag > 2:206100/1‑149 (MQ=255)cacGTAAATCAGGCAATTTATTAGTCGGAAAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCGGAAGGCCACGGAACCGGGACACCAACGCGTAATGCagag > 2:36534/1‑149 (MQ=255) ccaGGCAATTTATTTGTCGGACAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGCCACCATTGCATTTCAGCCAGCCTGTGGGGGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcc > 1:479580‑M2/2‑141 (MQ=255) gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaa < 1:439388‑M2/149‑13 (MQ=255) aaTTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCGTTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctgccaaaac < 1:516577‑M2/149‑15 (MQ=255) aaTTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaacc < 2:22232‑M2/149‑15 (MQ=255) ttatttGTCGGATAAGCCTTTGCTAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCCCCATTGCATTTCAGCCAGCCTGTTGGCGTAGTGGCTGAAGGCCACGGAAACGGGCCACTAACAGGTAATGCAGAACCTTCTCCCcaaccaac > 2:497194/1‑149 (MQ=255) ttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGTACACCAACAGGTAATGCAGAGccttctcccaaaccaag > 2:470310‑M2/1‑132 (MQ=255) ttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaag > 1:392651‑M2/1‑132 (MQ=255) tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaa > 2:49738‑M2/1‑125 (MQ=255) tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaa < 1:49738‑M2/137‑13 (MQ=255) ggATAAGCCTTTGCCAGTTCCGGGTAGTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGAAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgag < 2:409440‑M2/149‑27 (MQ=255) aGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt > 1:22232‑M2/1‑108 (MQ=255) gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCAGGACACCAACAGGTAATGCAGAGccttctccctaaccaaggttttcgagagccgtttgcacagtgccatc < 1:495689‑M2/149‑48 (MQ=255) cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGAAAAGAAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:315227/1‑149 (MQ=255) agAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc > 1:365299‑M2/1‑88 (MQ=255) agAAAAAGCGGCACCATCGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgc > 1:302307‑M2/1‑88 (MQ=255) aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgctaaaaggattct < 1:106743‑M2/149‑74 (MQ=255) cacgcctgtTGGCGCAGTGGCTTAAGTCCAACGAACCGGGACACCACCATGCAATGCAGAGcgttctccaaaaccaaggttttcgagagccttttgcacagtgccatcctatttgatatcgccaaacggattcttgcggcttaacagca > 1:139557‑M2/4‑61 (MQ=255) cTGTTGGCTGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcg > 1:217322‑M2/1‑56 (MQ=255) cTGGTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcg > 1:217217‑M2/1‑56 (MQ=255) ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAGTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgc > 2:495437‑M2/1‑48 (MQ=255) gAAGGCCTCGGAATCGGGTCACCAACAGGTACTGCAGAGccttttcccaatccaaggatttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaa > 1:114380‑M2/1‑39 (MQ=255) gCCACTGAACCGGGACACCAACAGGTAATGCAGAGCCATCTCCCAAACCTCCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa < 1:497194/149‑1 (MQ=255) cACGGAACCGGGACACCAACATGCAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgacttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtc > 2:270149‑M2/1‑33 (MQ=255) gggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccc > 1:461318‑M2/1‑24 (MQ=255) cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttcacagcagcgcgcgaagtgcggaaagtaactgcgcgtgccgccccttctcc < 2:163917‑M2/149‑133 (MQ=255) cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccctttgcacagtgccatccgatttgatatcgccgaacggattcttgcggcttaacagcatcgcgcgaagtgcggtaattaactggtcgtgccgccccttctcc > 1:409440‑M2/1‑17 (MQ=255) cAACAGGTAATGCAGAGCCTTCTCCCAAACCCACGTTTATGAAAATGAAGAAATAACAACCAAATGGCCTAATTCCTGCTTTTACCAGCGGGATTTAACATGCTTATTGGCTATGTCCGCGTCTCACCAGCTAACCAGAAcccaactct > 2:218302/1‑144 (MQ=255) aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctcca > 1:461920‑M2/1‑16 (MQ=255) tAATGCAGAGccttctcccaaaccaaggttttcgagagccgttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttccccaggcagcc < 2:243916‑M2/149‑140 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATg > 1:348679/1‑149 (MQ=255) | CACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATG > NC_000913_3_bme_pgi/1209454‑1209745 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |