New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	1333674 =	49 (1.050)	3 (0.070)	3/260	NT	6.1%	intergenic (+29/‑181)	topA/cysB	DNA topoisomerase I, omega subunit/N‑acetylserine‑responsive cysteine regulon transcriptional activator; autorepressor
	?	NC_000913_3_bme_pgi	1333698 =	45 (1.010)					intergenic (+53/‑157)	topA/cysB	DNA topoisomerase I, omega subunit/N‑acetylserine‑responsive cysteine regulon transcriptional activator; autorepressor

CATGGTTCGCTTTAGCCGTAAAACCAAACAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAA  >  NC_000913_3_bme_pgi/1333528‑1333819                                                                                                                                                   |                                                                                                                                                  cacttagacgctatcagaacatcgttttttcgtcacacctggcgggtgactaatacgatttaataataaaaaaggtgctaactataaccactataacatttatagccttagtgtataggtgtgaagaaaaaataatatgcaataaaaaa                                                                                                                                                 >  1:584537‑M1/147‑149 (MQ=255) cacttagacgccatcagaacatcgttttttcgtcacacctggcgggtgactaatacgatttaataataaaaaaggtgctatctataaccactatatcatttatagccttagtgtataggtgtgaagaaaaaataatatgcaataaaaaa                                                                                                                                                 >  1:3719‑M1/147‑149 (MQ=255)   tGGTTCGCTTTAGCCGTAAAACCAAACAGCAATATGTCTATTCGGAAAAAGACGGAAAGGCGACTGGATGGTCAGCATTATATGTTGATGGCAAATGGGTAGAAAAAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAgg                                                                                                                                               <  2:729231/149‑1 (MQ=255)   tGGTTCGCTTTAACCGTAAAACCAAACAGCAATATGTCTCAACGGAAAAAAAAGGAAAGGCGACGGGCTAGTCAGCATTGTATGTTGATAACAAATGGGATGAAGAAAAAAAATAACCTATAAATCAGACAGGTTTTTATAAACAAAga                                                                                                                                               >  2:413346/1‑148 (MQ=255)     gTTCGCTTTAGCAGTAAAACCAAACAGCAATATGTCTCTTCGGAAAAAGCCGGAAAGGCGACTGGCTGTTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGCAAAAAATAAACTTTAATTCTGTCAGGATTTTATCAACCAAgata                                                                                                                                             >  2:284773/1‑146 (MQ=255)           tttAGCCGTAAAACCAAACAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGAGACTGGGAAGATAGCATTATATGAAGATTTCAAATGGGTTGAAGGAAAAAAATAACCACTAATTCTGTAAGGTTTTTATAAACAAAAGGACGCGaa                                                                                                                                       >  1:662321/1‑149 (MQ=255)             tAGCCGTAAAACCAAACAGCAATAGGTTTCTTCTGAAAAAGACGGAAAGTCGACTGGCTAGTCAGCATTGTATGTTGATGGGAAATGGGTGGAAGGAAAAAAATAACCTTTAATTCTGGCAGGTTTTTATAAACAAAGGGTCGCGAAAg                                                                                                                                     <  1:859597/149‑1 (MQ=255)               gCCGTAAAACCAAACAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCg                                                                                                                                   >  1:610083/1‑149 (MQ=255)                  gTAAAACCAAACAGCAATATGTCACTACAGAAAAAAACGGAAAGACGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTAAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATACACAAAGGATCGCCAAAGGGGcc                                                                                                                                >  2:64690/1‑149 (MQ=255)                      tcgttttttcgtcacacctggcgggtgactaatacgatttaataataaaaaaggtgctaactataaccactatatcatttatagccttagtgtataggtgtgaagaaaaaataatatgcaataaaAAAGGTTCGCGAAGGCGTCCCttt                                                                                                                            <  1:755696‑M1/24‑1 (MQ=255)                        ccAAACAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCttttt                                                                                                                          <  2:627820/149‑1 (MQ=255)                        ccAAACAGCAATATATCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAACGGCCCttttt                                                                                                                          >  1:765993/1‑149 (MQ=255)                          aaaCAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTa                                                                                                                        <  2:836104/149‑1 (MQ=255)                          aaaCAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTa                                                                                                                        >  2:871412/1‑149 (MQ=255)                           aatagtaaTATTTCTCTTTGGAAATAGACGGAATGGCGACTTGTTGGTTAGTATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTAt                                                                                                                       <  1:745530/143‑1 (MQ=255)                                   tatGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCATGTTTTTATAAACAAAAGATCGCGAAAGCGGCCCTTTTTTATTGCAtatt                                                                                                               >  1:142346/1‑149 (MQ=255)                                      cctggcgggttactaatacgatttaataataaaaaaggtgctaactataaccactatatcatttatagccttagtgtataggtttgaagaaaaaataatatgcaataaaAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATattatt                                                                                                            >  1:127‑M1/110‑149 (MQ=255)                                          ctTCGGAAAAGGACGGAAAGGCGACTTGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAACTCTTTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTAtttttt                                                                                                        <  1:129474/149‑1 (MQ=255)                                           ttCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTttc                                                                                                       <  1:319290/149‑1 (MQ=255)                                             cgcaaaaaTACGGAATGGCTACTGGTTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTttctt                                                                                                     <  1:836201/146‑1 (MQ=255)                                                gaggaagacgagttaataataaaaaaggtgcgaactataaccactatatcatgtatagccttagtgtataggtgtgaagaaaaaataatatgaaataatAAAGGGTCGCGAAAGCGTCCCTTTTTTAGTGCATATTATTTTTTCTTcac                                                                                                  >  2:755696‑M1/100‑149 (MQ=255)                                                  aaaGGCAGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTGTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTCTTTTTTCTTCacac                                                                                                >  2:829590/1‑149 (MQ=255)                                                  aaaGACGTAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTCATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCCGCCCTTTTTTATTGCATATTATTTTTTCTTCccac                                                                                                >  2:305858/1‑149 (MQ=255)                                                        ggAGAGGCGATTGGCTGGCTGGCATTGTAGGGTGTGGGCGAGTGGGGTGAAGGAAAAAAATAACGTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACCTCTATac                                                                                          >  2:530244/1‑149 (MQ=255)                                                        ggAAAGGCGACTGGCTGGTCAGAAATTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGGCGCGAAAGCGGCCCTTTTTTATTGCCTATTATTTTTTTTTCTCCCCTATac                                                                                          >  2:658097/1‑149 (MQ=255)                                                              gCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAg                                                                                    >  1:326342/1‑149 (MQ=255)                                                              gCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAg                                                                                    >  1:492163/1‑149 (MQ=255)                                                                   tggctggTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCtat                                                                               <  1:642304/149‑1 (MQ=255)                                                                    ggctggTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTttctt                                                                                                     <  2:327078/126‑1 (MQ=255)                                                                    ggctggTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTttctt                                                                                                     >  1:327078/1‑126 (MQ=255)                                                                         gTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGATTTTATAAACAAAGGGTCGCGAAAACGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTAAAAATGa                                                                         >  1:526343/1‑149 (MQ=255)                                                                            aGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTGTTCACACCTATACACTAAGGCTATAAATGagat                                                                      >  2:67060/1‑149 (MQ=255)                                                                                ttttATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTg                                                                  >  1:828425/1‑149 (MQ=255)                                                                                    aTGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTta                                                              <  2:828425/149‑1 (MQ=255)                                                                                           tGGCAAATGGTTTAAAGGAAAAAAATATCCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTATGGCTATAAATGATATAGTGGTTATAGTTAg                                                       <  2:162895/149‑1 (MQ=255)                                                                                             gCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTAAAAAATAAGGAAATAAATGATATAGTGGTTATAGTTAGCa                                                     >  1:20179/1‑149 (MQ=255)                                                                                              cAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGACGAGGAAACGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATATTGGTGATAGTTAGCAc                                                    >  1:524996/1‑149 (MQ=255)                                                                                                   gggTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATATTTCGCACCtttt                                               >  2:554373/1‑149 (MQ=255)                                                                                                    ggTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATAAAGTTGTTATAATTAGCACCttttt                                              >  1:504969/1‑149 (MQ=255)                                                                                                     agtGAAGAAAAAAAATAACCTTTAATTCTGTCAGGTTTTTAGAAAAAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACTTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCtttttt                                             <  2:10888/147‑1 (MQ=255)                                                                                                      ttataGGAAAAAAAACACATGTAATTCTGTCGGGTTTTTATAAACAAAGGGTCGCTAAAGCGGCCCTTTTTTATTGCATTTCATTTTTTCTTCACACCTATACACCAAGGCTATACATGATATAGTGGTTACAGTTAGCACCCTTTtta                                            <  2:738420/145‑1 (MQ=255)                                                                                                         aaGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTttatta                                         >  2:637307/1‑149 (MQ=255)                                                                                                            gAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCAGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTttattatta                                      >  2:146419/1‑149 (MQ=255)                                                                                                                   aTAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGtt                               <  2:765993/149‑2 (MQ=255)                                                                                                                   aTAACCTTTAATTCTGGCAGGTTTTTATAAACAAAGGGTTTCGAAAGCGGCCCTTTTGTATTGCATATGATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGCGGTTATAGTTAGCACCTTTTTTATTTTTAAATCGTa                               <  2:55801/149‑1 (MQ=255)                                                                                                                   aTAACCTTGAAGTCTGTTAGGGTTGTATAAACAAAGGGTGGCGAAAGCGGCCCTTTTTTATTGCATATTGTTTTTTCTTCACACCTATACACTAATGCTATAAATGATATAGTGGTTATAGTTAGCATCTTTTTTATTATTAAATCGTa                               <  2:722778/149‑1 (MQ=255)                                                                                                                    tAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAAACTATAAATAATATAGTGAATATAGTTAGCACCTTTTATATTATTAAATCGTAt                              >  1:196864/1‑149 (MQ=255)                                                                                                                      aCCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTa                            <  2:326342/149‑1 (MQ=255)                                                                                                                         tttAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTTTTAAATCGTGTTAGTc                         >  2:220569/1‑149 (MQ=255)                                                                                                                          ttAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTCAGGCTATATATGATATAGTGGTTATAGTTACAACACTCTTTATATTTTAATCGTATTAGttc                        >  2:819468/1‑147 (MQ=255)                                                                                                                          ttAATTCTGTCACGTTTTTATAATTAAAGGGTCGCGAAAGCGGCTCTTTTTTATTGTTTATTATTTTTTCTTCACACCTATACACTAAGGCTATAAGTGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCa                        <  1:398209/149‑1 (MQ=255)                                                                                                                            aaTTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCAcc                      >  1:45552/1‑149 (MQ=255)                                                                                                                             tttttGTCTGGTTTTTATAATTTAAGGGTCGTGAAAGCGGCCCGTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCAccc                     <  1:652207/145‑1 (MQ=255)                                                                                                                                 tGTCAGGTTTTTATAAACAAAGGGTCGAGTAAACTTCCTTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCa                 >  2:644198/1‑149 (MQ=255)                                                                                                                                    tgggTTTTTATGAAGAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTGAGCAGCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGgt              <  2:599799/147‑1 (MQ=255)                                                                                                                                    cAGGTTTTTATACACAAAGGGTCGCTAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGgt              <  2:762740/149‑1 (MQ=255)                                                                                                                                        tttttATAAACAAAGGGTCGCTAAAGCGGCCCTTTTTTATTTCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGa          <  1:834404/149‑1 (MQ=255)                                                                                                                                                aaCAAAGGGTTGCGAAAGCGGCTCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGTTATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGaaaaaa  <  2:7252/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  CATGGTTCGCTTTAGCCGTAAAACCAAACAGCAATATGTCTCTTCGGAAAAAGACGGAAAGGCGACTGGCTGGTCAGCATTTTATGTTGATGGCAAATGGGTTGAAGGAAAAAAATAACCTTTAATTCTGTCAGGTTTTTATAAACAAAGGGTCGCGAAAGCGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTAGCACCTTTTTTATTATTAAATCGTATTAGTCACCCGCCAGGTGTGACGAAAAAA  >  NC_000913_3_bme_pgi/1333528‑1333819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.