New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	2279413 =	41 (0.880)	3 (0.070)	3/260	NT	7.2%	coding (348/1191 nt)	bcr	bicyclomycin/cysteine/sulfonamide efflux transporter
	?	NC_000913_3_bme_pgi	2279435 =	38 (0.850)					coding (326/1191 nt)	bcr	bicyclomycin/cysteine/sulfonamide efflux transporter

AATGCCAGCTCAGCCACACCAGCACCCAGCCGCCAACTATCGGTGCCATCAGCGGTGCAATGGTTGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCTTACGCCCGAAGCTGTCT  >  NC_000913_3_bme_pgi/2279268‑2279554                                                                                                                                                  |                                                                                                                                              acggCCAGCTCAGCCACACCAGCACCCAGCCGCCAACTATCGGTGCCATCAGCGGTGCAATGGTTGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTg                                                                                                                                            <  2:156863/146‑1 (MQ=255)        gCTCAGCCACCCCAGCACCCAGCCGCCAACTATCGGGGCCATCAGCGGTGCAATGGTTGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGgccgcag                                                                                                                                     <  1:646933/149‑1 (MQ=255)                    cAGCACTCAGCCGCCAACGATCGGTGCCATCAGCGGTGCAATGGTTGTCACCGGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCTCGCATCACGGCGTAAATAACCACGCTGGCCCCAGCCCCagccagcc                                                                                                                         >  2:342999/1‑149 (MQ=255)                          aggcagcttcgggtgtaagccggtggtgctcggcggtacgctggtgtttgccgccgccgcggtggcgtgtgcgttggcaaacaccatcgatcagctgattgtgatgcgtttcttccacggGCTGGCCGCAGCCGCAGCCAGCCCGTGga                                                                                                                   >  1:369116‑M1/121‑149 (MQ=255)                                 ccAACTATCGGTGCCATCAGCGGTGCAATGGTTGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCcgcagccgcagc                                                                                                                              >  1:835367/1‑131 (MQ=255)                                 ccAACTATCGGTGCCATCAGCGGTGCAATGGTTGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCcgcagccgcagc                                                                                                                              <  2:835367/131‑1 (MQ=255)                                   aaCTATCGGTGCCATCAGCGGTGCAATGGTTGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCa                                                                                                          <  2:473188/149‑1 (MQ=255)                                           gTGCCATCAGCGGTGCAATGGTTGTCACCAGCATGACACACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGAACATGCAGTCAGCAGACAAAGCCATCCCTTACAAGAAACGCATCACAATc                                                                                                  >  1:165625/1‑149 (MQ=255)                                              ccATCAGCGGTGCAATGGTTGTCACAAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGc                                                                                               >  2:644556/1‑149 (MQ=255)                                                       gTGCAATGGTGGTCACCAGCATGACAAACGACATCAACCTCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCCGCCGCAGCCCGCCCGACTAACTAACGCATCACAATCAGCTGATCGATg                                                                                      <  1:891799/149‑1 (MQ=255)                                                          cAATGGTTGTAACAAACATTAGGAACGACATCATCCGCGAAAACTCTTCTTTCGGGAAAATAAAGCGCATCAGGGCGTTAATGACCAAGCTAGCCGCAGCCGCAGCCAGACCGTGGAACAAACTCAACACAATACACTGATCCATGgtt                                                                                   >  2:554834/1‑148 (MQ=255)                                                            aTGGTTGGCACCAGCATGACAAACGACATCATTCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGtt                                                                                 <  1:278427/149‑1 (MQ=255)                                                               gTTGTCACCAGCATGACACACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGTGCGTTAATGAACACGCTGGCCGCAGCCGCAGCCAGCGCGTGGAAGAAACGCATCGCAATCAGCTGATCGATGGTGTTTGc                                                                              <  1:683410/149‑1 (MQ=255)                                                                ttGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGcc                                                                             >  1:784302/1‑149 (MQ=255)                                                                   tCACCAGCATGACAAACGACATTATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAAc                                                                          <  1:110297/149‑1 (MQ=255)                                                                      ccAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTTGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGca                                                                       <  1:606385/149‑1 (MQ=255)                                                                         gCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATAGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCAGAAGCCAGCCCGTGGAAGCAACGCCTACCAATCAGCTAATCCACCGTGTTAGCCAAccaccca                                                                    >  2:702092/1‑143 (MQ=255)                                                                            tGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGGATACCTCCCGTGGAAGAAACGCATCACAATCAACTGATCGATTATGTTTGGCAACGCAAACGcc                                                                 >  1:206685/1‑149 (MQ=255)                                                                               cAAACGACAGCATCCGCGAGAACTCTTCTTTCGGGTAAATATTGCGCATGAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATTGTGTTTGACAACGCGGCCGCCAcc                                                              <  2:636959/149‑1 (MQ=255)                                                                                    gACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAACCAGCCCGTGGAAGAAACACATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCgcggc                                                         >  1:381044/1‑149 (MQ=255)                                                                                    gACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCATTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGAACACGCCACCgcggc                                                         >  1:687791/1‑149 (MQ=255)                                                                                      catcatCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCgcggcgg                                                       <  1:644556/149‑1 (MQ=255)                                                                                       atcatcCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCgcggcggc                                                      >  1:686100/1‑149 (MQ=255)                                                                                           tcCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACCCCACCGcggcggcggaa                                                  >  2:749333/1‑147 (MQ=255)                                                                                             cgcgAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGAACGATGGTGTTTGCCAACGCACACGCCGCCgcggt                                                         <  2:712720/140‑2 (MQ=255)                                                                                             cgcgAGAACTCTTCTTTCGGGTAAATATCGCGAATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCGCCgcggt                                                         >  1:712720/1‑139 (MQ=255)                                                                                                    aCTCTTTTTTCGGGTAATTATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGc                                         <  1:402515/149‑1 (MQ=255)                                                                                                      tcttctTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGt                                       >  1:514467/1‑149 (MQ=255)                                                                                                       cttcttTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTa                                      <  2:852200/149‑1 (MQ=255)                                                                                                        ttcttTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAATAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTAc                                     >  1:33958/1‑149 (MQ=255)                                                                                                        ttcttTCGGGCAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCAAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACACCACCGCCGCCGCGGCCAACAACAGCGTAc                                     >  2:63767/1‑149 (MQ=255)                                                                                                         aacaccatcgatcagctgattgtgatgcgtttcttccacggGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAAc                                                                                                             <  2:180320‑M1/35‑1 (MQ=255)                                                                                                         aacaccatcgatcagctgattgtgatgcgtttcttccacggGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAAc                                                                                                             >  1:180320‑M1/42‑76 (MQ=255)                                                                                                           tttCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAAAACCAGCGTAccgc                                  >  1:267507/1‑149 (MQ=255)                                                                                                                ggTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGc                             >  2:459153/1‑149 (MQ=255)                                                                                                                ggTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGCGTTTGCCAACGCACACCCCACCGCGTAGGCGGCAAACACAAGCGTACCGCCGAGc                             >  1:387850/1‑149 (MQ=255)                                                                                                                     atatCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCCGCCGCAGAAAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATTGTGTTTGCCAACACACACGCCCCCGCGGCGGCGGCAAACACCAGCCTCCCGCCGaccacccg                        >  2:860492/1‑147 (MQ=255)                                                                                                                      tatCGCGCATCAGGGCGTTAATGACCACGCAGGACCAAGATGACACTACCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAATATTAGCGTACAGCCGGGCaccacc                       <  2:636715/149‑1 (MQ=255)                                                                                                                        tCGCGCATCAGAGCGTTAATGACCACTATGGGCGCCGCCGCCGCCAACCCGTGGAAGAAACGCATCACAAACCGCTGATCAATGGTTTTTGCCAACGCAAACGCCACCGCGGCGGCGGCCAACACCAGCGTCCCGCCGAGCacgacccg                     >  2:61500/1‑147 (MQ=255)                                                                                                                         cgccCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTTCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGc                    <  1:553647/149‑1 (MQ=255)                                                                                                                          gcgcATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAACTGATCGATGGTGTTTGCCAACGCACAAGCCACCGCGGCGGCGGCAAAGACCAGCGTACCGCCGAGAACCACCGGCt                   >  1:694563/1‑149 (MQ=255)                                                                                                                           cgcATCAGGGCGTTAATGACCACGCTGGACGCAGCACCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCtt                  <  1:841228/149‑1 (MQ=255)                                                                                                                                      gTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGGGGCGGCCAACACCAGCGTACCGCCGAGCACCACCGGCTTACGCCCGAAGc       >  2:560426/1‑149 (MQ=255)                                                                                                                                      gTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAAAACCAGAGTAACGCCGAGCACCACCGGATTAGGCCCGAAGc       >  1:412158/1‑149 (MQ=255)                                                                                                                                           tGACCACGCTGGCCGCAGCCGAAGCCAGCCCGTGGAAGAAACGAATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCTTACGCCCGAAGCTGTCt  <  1:352018/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                              AATGCCAGCTCAGCCACACCAGCACCCAGCCGCCAACTATCGGTGCCATCAGCGGTGCAATGGTTGTCACCAGCATGACAAACGACATCATCCGCGAGAACTCTTCTTTCGGGTAAATATCGCGCATCAGGGCGTTAATGACCACGCTGGCCGCAGCCGCAGCCAGCCCGTGGAAGAAACGCATCACAATCAGCTGATCGATGGTGTTTGCCAACGCACACGCCACCGCGGCGGCGGCAAACACCAGCGTACCGCCGAGCACCACCGGCTTACGCCCGAAGCTGTCT  >  NC_000913_3_bme_pgi/2279268‑2279554

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.