| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 2549484 = | NA (NA) | 3 (0.070) | 3/258 | NT | NA | noncoding (19/98 nt) | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_bme_pgi | 3563589 = | NA (NA) | noncoding (8/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
CGGTCAGTTGCCGATTGCAACTTATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAAT > NC_000913_3_bme_pgi/2549337‑2549628 | cgttCAGTTGCCAATTGCAACTTATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTAt < 1:455274/146‑1 (MQ=255) tattcccttaattaaaaaataggttagatttttgcctaagttcgctttgttcatgccggatgcgacgtgaacgtcttatctggcctacaagaccatgcaaatttaatatattgcataaaccacgtaggcctgataagcgtagcgcATCa > 2:537213‑M1/146‑149 (MQ=255) aattccctgaattaaaaagtaggttagatttttgataaagtgcgtgttgttcatgccggatgcgacttgaacgtatgatttggcctacaagaccatgcaaattcaatatattgcataaaccacgtatgcctgataagcgtagcgcataa > 2:652263‑M1/146‑147 (MQ=255) tCAGTTGCCGATTGCAACTTATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAg < 1:705912/149‑1 (MQ=255) tCAGTTGCCGATTGCAACTTATGGTTGGGTAGCTGATCAGGTGTATGCTGCGTTACAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAg < 2:819150/149‑1 (MQ=255) attcactgaattaaaaagtaggttagatttttgacaaagtgcgctttgttcatgccggatgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtaggcctgataagcgtagcgcATCAg > 2:313451‑M1/145‑149 (MQ=255) aGTTGCCGATTGCAACTTATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGc > 2:509479/1‑149 (MQ=255) ttGCCGATTGCAACTTATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTAAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCt > 2:17091/1‑149 (MQ=255) cctgaattaaaaagtaggttagatttttgacaaagtgcgctttgttcatgccggatgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagccctgataagcgtagcgcATCAGgccg < 1:788600‑M1/9‑2 (MQ=255) tcgCAACTTATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTATAGCAGAATTAATAAAAAGGCCAGTCAGAAGTGTTACTGGCTGGTCTGATAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGGGGa < 2:419087/147‑1 (MQ=38) ggTTGGGTAGTTGAGCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAatat > 2:816851/1‑149 (MQ=255) gTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAatata > 1:556781/1‑149 (MQ=255) ttGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAg > 1:608948/1‑149 (MQ=255) aTCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCAc < 1:481951/149‑1 (MQ=255) tCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCATGATGCGCTACGCTTATAAGACCTACGTGGAGCCCACAATATATTGAATTAGCACg > 1:367746/1‑149 (MQ=255) ttgtggcgTCAAAGCAGAAGTAATAAAAAGGCCAGTCACTAATGTTACTGGCTGCTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGTTACGCTTATCAAGCCTACGTGGAGCCCACAATATATTGACTTAGCACGATTTCGTa < 1:366704/145‑1 (MQ=37) tGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAg > 1:107616/1‑149 (MQ=255) cggcgTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGCCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTCGGc > 2:711790/1‑149 (MQ=255) ttAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGGTACTGGCTGGGCTGAGAGTGCTGACAAACGCAACACTGCCTGATGCGCTACGCGTGTCAGGCCTACTGGGAGCCCCCCACATAGTGAATTAGCACCACGTCGTAGGCCggtt > 2:487474/1‑147 (MQ=255) aaaaGTAATAAAAAGGTCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTTCTGACTATCGTAAAATTGCTTGTTGTGCTACGCTTATCAGGTCTTCGTGGAGGCCCTACGCAATTAAATTAGCACGATTTCGTAGGCCGGATAAGGCGt < 1:436781/147‑1 (MQ=255) gAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGTCTGGTCTGAGAGTGCTGACAAACGCAAAAGTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGtt < 2:722676/149‑1 (MQ=255) gAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGGCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAATCCTAAATGCAGACCACGCTATAGAAAAATAGCACGATTTCGTAGGCCGGATAAGGCGtt > 2:862638/1‑149 (MQ=25) taataaAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCAcg > 2:808819/1‑149 (MQ=255) ataaAAAGGCCAGTCAGTAATGTTTCTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTAACAGTCCTACGTAGAGCCAACAATATATTGAATTAGCACGTTTTCGTAGGCCAGATAAGGCGTTCAcgcc > 1:772127/1‑149 (MQ=25) aaaaaGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCAcgccgc > 1:499525/1‑149 (MQ=255) cagtcagtAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCAGCg > 2:672895/1‑149 (MQ=255) tAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACaa < 1:509479/149‑1 (MQ=255) tAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACaa > 1:488032/1‑149 (MQ=255) tAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACaa > 2:512766/1‑149 (MQ=255) tGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGGGACCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAAcgc > 1:122922/1‑149 (MQ=255) ttACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACgcgc > 1:126504/1‑149 (MQ=255) aCTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCAc < 1:539912/149‑1 (MQ=255) gTCTGAGAGTGCCGACAAACGCAAAACTGCCTGATGCGCTACGCTTATTAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACTATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTcaa < 1:52480/149‑1 (MQ=255) gagaGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGACGTTCACGCCGCATCCGGCGTGTACAACGAGCCCTTGATcagaacc > 2:897309/1‑144 (MQ=21) agTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATCTTGCATTAGCACGATTTCGTAGACCGGATAAGGCGATCACCCCGCAACCGGCATGTACAACCCACACAACGTCAACAATCta > 1:409184/1‑148 (MQ=18) gTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGTCCACAATATATTGAATAAGAACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGa < 2:774596/149‑1 (MQ=255) gTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGa < 2:608948/149‑1 (MQ=255) gTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATACTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGa < 2:774619/149‑1 (MQ=255) aaaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGACGGATAAGGGGTTCACGCTCCTGCCGGCGTGTACAACGTGCACTTGGTCAACAATCTGAAGCcagtc > 1:392709/1‑149 (MQ=21) aaCGCAAAAATGCCTGATGCGCTTCGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCcagtca < 2:475724/149‑1 (MQ=255) cgtccTTATGCGCTAGGTCTATCCGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTa < 1:224415/146‑1 (MQ=25) ggcctgataagcgtagcgcATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTa > 1:883568‑M1/20‑68 (MQ=255) ggcctgataagcgtagcgcATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTa < 2:883568‑M1/49‑1 (MQ=255) gcctgataagcgtagcgcATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACt < 1:897024‑M1/131‑1 (MQ=255) aTGCGCTACGTTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTg < 1:466986/149‑1 (MQ=255) gCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGCTAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTGAACAATCTTAGGCCAGTCAGTAATGTTACTTCGTCGCCTTTact > 2:770134/1‑147 (MQ=37) gCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAAt > 1:305500/1‑149 (MQ=255) gCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATACGGCGTGTACAACGCGAACCTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAAt > 1:701649/1‑149 (MQ=255) | CGGTCAGTTGCCGATTGCAACTTATGGTTGGGTAGTTGATCAGGTGTATGCGGCGTTAAAGCAGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGTGTACAACGCGCACTTGGTCAACAATCTGAGGCCAGTCAGTAATGTTACTGCCTGGCCTTTAAT > NC_000913_3_bme_pgi/2549337‑2549628 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |