| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 1207790 = | 7 (0.150) | 35 (0.850) | 32/240 | NT | 78.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_bme_pgi | 1209619 = | 13 (0.320) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
TGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGC > NC_000913_3_bme_pgi/1209476‑1209765 | cgTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGTCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTa < 1:307880/148‑1 (MQ=255) tAAGCCTTTGCCAGTTTCGGGTTTTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAt < 1:690605/149‑1 (MQ=255) ttttgcgggattccacccccactgaatgattactgattgctcaatatcaccaatcataaccggtatagctatgaaacaggtgcgtcctaacgcagccggtgcttcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATga < 1:397660‑M2/15‑1 (MQ=255) cTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGAAGTGGCTGAAGGCCACGGAACAGAGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaaga > 1:70493/1‑149 (MQ=255) cggcattcgaccacctttgaatgattaatgatttctcaataccattaatcataaccggtatagctatgaaaacgttgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccacaccaaCGTTTATGAAAATGAAGaaa < 1:42750‑M2/20‑1 (MQ=255) ttccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatcgctatgaaaccggtgcgtcctaatgtagccgttgcttcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa > 2:217223‑M2/125‑149 (MQ=255) ttccaccaccactgaatgattactgattgcgcaaaaccaccaatcataaacggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa > 2:305486‑M2/125‑149 (MQ=255) gatgcgtgTATTATACAGCAGAAATAGCGGCACCATTGCATTTCAGCCAGCCTTTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa < 2:349915/142‑1 (MQ=255) ccagccccactcaatggttactgtttgcttaataccaccaatcataaccggtatagctatgaaatcggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAg < 2:139364‑M2/27‑1 (MQ=255) cacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAATTAACAaga > 2:128063‑M2/122‑148 (MQ=255) acccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCa > 2:629278‑M2/121‑149 (MQ=255) cactgaatgattacggattggtcaatagcaccaatcataaccggtatagctatgaaaccggcgcggcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAACTgg < 2:459072‑M2/34‑1 (MQ=255) tgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtggggcctaatgtagccgttcctgcattgagttttgctacttctccgaaaccaaCGTTTATGAAAATGAAAAAATAACAAACAAATGGcat > 2:327104‑M2/113‑149 (MQ=255) tcttcAGCAGAAAAATCGGCTCCCTTGCATTTGAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGACCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat < 1:585793/149‑1 (MQ=255) ttactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtaaccgttgctgcattgagttttgctccttctcccaaatcaaCGTTTATAAAAATGAAGAAATAACAACCAAATGGCATCATacca > 2:672763‑M2/106‑148 (MQ=255) tgattgctcaataccaccaatcataaccggtatagctatgaaacaggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctaccaaaccaaCATTTATGAAAATGAAAAAATAACAAGCAAATGGCATCATTCCTGCtt > 1:190631‑M2/102‑149 (MQ=255) attgctcaataccaccaatcataaccggtatagctatgaaaccggagcgtcctaatgtagccgttgctgcattgagttgtgctccttctcccaaagcaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTgattgt > 2:813002‑M2/100‑147 (MQ=255) ctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCa < 2:703213‑M2/54‑1 (MQ=255) tgataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgg < 2:218927‑M2/56‑1 (MQ=255) caataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGATGAAATAACAAGCAAATGGCATCATTACTGCTTTTACCAgg > 1:633871‑M2/94‑149 (MQ=255) ataccaccaaacataaccggtatagctatgaaaccggtgcgtcctaatgtagacgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg < 1:844018‑M2/58‑1 (MQ=255) cATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACAACAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg > 1:695667/1‑149 (MQ=255) caccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaac > 2:345300‑M2/88‑88 (MQ=255) caccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaac < 1:345300‑M2/1‑1 (MQ=255) caccaatcataaccggtatagctatgaaaccggtacgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAGGAAGAAATAACGAGCAAATCGCATCATTCCTGCGTTTACCAGGGggact > 2:10859‑M2/88‑147 (MQ=255) ccaatcataaccggtatagatatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGCAGAAATAACAATCAAATGGCATCATTCCTGCTTTTACCACGGGGatttt > 2:689620‑M2/86‑148 (MQ=255) caataataaccggtagagctatgaaacgggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa < 2:310178‑M2/65‑1 (MQ=255) ttCAGCCAGTCTGTTGGCGGAGTGGCTTAAGGCGACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa < 1:266621/149‑1 (MQ=255) atcataaccggtatagttaagcaaccggtgcgtcctcatgtagccgttggtgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAATTAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa < 2:542422‑M2/67‑1 (MQ=255) atcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa < 1:503376‑M2/67‑1 (MQ=255) atcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa < 1:449976‑M2/67‑1 (MQ=255) tcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt < 1:751078‑M2/68‑1 (MQ=255) aaccacccTGTTGTCGGAGTGGCTGAAGACCACGGAACCGGTACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGc < 1:422832/147‑1 (MQ=255) taaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCt > 1:453446‑M2/79‑149 (MQ=255) accgggatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTa < 2:751456‑M2/73‑1 (MQ=255) tatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc < 2:856891‑M2/78‑1 (MQ=255) tactaaaccggtgcgtcctaatgtcgccgtggctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTa < 2:788560‑M2/84‑1 (MQ=255) tgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAACATGAAGAAATAACAAGCAAATGGCATAATTCCTGCCTTTACCAGGGGGATTTAAACTCCTTATTACCTATGTAcg > 2:747034‑M2/64‑149 (MQ=255) aaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctccaaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAtgcg > 2:704305‑M2/62‑149 (MQ=255) tGGCTGAAGGCCACGGAACCGGGACAACAACAGGTAATGCAGAGCATTCTCCCAAATCAATGTTTATGAAAATGAAGAAATAACAAGCAAGTGGCATAATTCCTGCTTTTCCCAGGGGGATTTAACATGATTGTTGGGTGTGTGTGCGt > 2:245972/1‑149 (MQ=255) cggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTACTGCTTTTACAAGGAGGATTTAACATACTTTTTGGCTATGTCCGGATATc > 1:413472‑M2/58‑149 (MQ=255) gAAGGCCACGGAATCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAATAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAGTTAACATGCTTATTGGCTATGTACGCGTATcaa < 1:32503/149‑1 (MQ=255) aaagtagccgttgctgcattgaggtttactccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGTGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAcc < 2:703678‑M2/103‑1 (MQ=255) tagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa < 1:502372‑M2/107‑1 (MQ=255) ccGGGACAACAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa < 2:695667/149‑1 (MQ=255) ggctgcattcagttttgtcacttctaccaaaccaaCGTTTATTAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt < 2:349034‑M2/114‑1 (MQ=255) attgagttttgctccttctcccaaaccaaCGTTTATGCAGATGAAGAAATTACAAGCAAATTGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACaa < 1:244851‑M2/120‑1 (MQ=255) ggTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAc < 1:22107/149‑1 (MQ=255) tGCAGAGCGTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGAACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAt > 2:795424/1‑149 (MQ=255) tttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATg > 2:225783‑M2/23‑149 (MQ=255) ttgctctttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgc < 2:781804‑M2/128‑1 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCt > 2:225586‑M2/19‑149 (MQ=255) cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGTGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa > 1:332784‑M2/16‑149 (MQ=255) cttctcccaaacacaCGTTTATTAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa < 2:119893‑M2/134‑1 (MQ=255) ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGTATCATTCCTGCTTTAACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAACGACCAGAACACAGATCTACAACGTAATGCGCTGAAc > 1:791009‑M2/15‑149 (MQ=255) tcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAATTAACATGCTTATTGGCTATGTACGCGTATGAACAAATGACAAAAACACATATCTACAAGGTAATACCCTGAActgg > 2:285463‑M2/12‑148 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATGTACCACACAATGCGCTGAAcggtga > 2:588328‑M2/10‑148 (MQ=255) ccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGAGGAACTAACATGCTTATTGGCTATGTCCGCGTATCAACAAATGACCAAACCACAGATCTACAACGCAATGCGCTGAACTGTGCAGGAt > 2:398449‑M2/5‑149 (MQ=255) aaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAAATGCTTATTGGCTATGTACGCGTATCAACAAATGACCACAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGCTGc > 2:398101‑M2/3‑149 (MQ=255) | TGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGC > NC_000913_3_bme_pgi/1209476‑1209765 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |