New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 2779754	36 (0.770)	3 (0.070)	3/258	NT	7.9%	coding (2973/4581 nt)	ypjA	adhesin‑like autotransporter
	?	NC_000913_3_bme_pgi	= 2779757	36 (0.810)					coding (2970/4581 nt)	ypjA	adhesin‑like autotransporter

GACACTGCCCCGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGCCCGGGCCAGAGCCTGAAACTCATCTTTTGACCGCCCAAGGGTATATTGCCCGCC  >  NC_000913_3_bme_pgi/2779610‑2779894                                                                                                                                                    |                                                                                                                                          gACACTTCCCCGGCTGGCAGCCGTCAGGTTGGCAAGCTTGGTATCGATGTCATTTCTCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTc                                                                                                                                          >  1:381350‑M2/1‑148 (MQ=255)      tGCCCCGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTTGCGTCATTAACGACAGGCTTcctgtc                                                                                                                                     <  1:303604‑M2/149‑7 (MQ=255)                    gCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGa                                                                                                                       <  2:880687/149‑1 (MQ=255)                    gCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCAAGAGTCAATGTCGAGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGa                                                                                                                       <  1:91174/149‑1 (MQ=255)                      cGTCAGGTCGGCAAGCGTGGTATCGACACCATTTCCCAGACTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATg                                                                                                                     <  1:112033/149‑1 (MQ=255)                        tCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCa                                                                                                                   >  1:386521/1‑149 (MQ=255)                                  aaGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCg                                                                                                         >  2:509270/1‑149 (MQ=255)                                     ggTGGTATCGATGCCATGTCCCAGAGTCAAGGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCAGCGGCGTCATTAACGACAGGCTCCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTAc                                                                                                      <  2:226189/148‑1 (MQ=255)                                            tCGACGCCATGTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTa                                                                                               <  1:629650/149‑1 (MQ=255)                                                 gCCATTTCCCAGATTCAATGTCGCGTTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGa                                                                                          <  1:9291/149‑1 (MQ=255)                                                      ttCCCAGAGTCAATGGCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGcc                                                                                     <  1:131283/149‑1 (MQ=255)                                                              gTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGcc                                                                             >  1:745141/1‑149 (MQ=255)                                                               tCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTTTCGCGCCACTGACCGATTCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCa                                                                            >  1:409489/1‑149 (MQ=255)                                                                    ggcccgcTATCGGTAAACCGGACCGTCCCTGCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCGGAGTAGACGATTGCCGTACCGCCAGCGAc                                                                       <  2:645044/145‑1 (MQ=255)                                                                           tagcGGTAAGCCGGACCTCCCCTTCGAGTAACACCGGCTTACCATGATGCGTGGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGgaga                                                                <  2:862562/146‑1 (MQ=255)                                                                           tATCAGTAATCCGGACCGCCCGTTCGATTTTACCTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTCTCGCGCCACTGAGTCATGCATCCTCCAGCTTTCCTGCGGATACGATTGTCTTACCGCCAGCGACCTGgaga                                                                <  2:803840/149‑1 (MQ=255)                                                                                gTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGGAGAtcttc                                                           >  2:728680/1‑149 (MQ=255)                                                                                    tCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCATGGCGTCATTAACGACAGGCTTCCTGTCGACCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCACCGACCTGGGCATCTTCTGcc                                                       >  2:392885/1‑149 (MQ=255)                                                                                             ccccTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGCCCGGGCCaga                                              >  1:386987/1‑149 (MQ=255)                                                                                                     aGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGCCAGGCTTCTTGTTGTGCCGCTGACGGTTGCAGACGCCAGCTTACCTGCGCATACGATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGCCCGGGCCAGAGCCTGaaa                                      <  1:176987/149‑1 (MQ=255)                                                                                                       tttAACTGGCGTAACATTATCCCGTGGCGGCAGTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGACAGCGTACCTGCGTAGACGATTGCCGTAACGCCAGCGACCTGGAGATCTTCTGCCCGGCCCAGAGCCTCAAACt                                    >  2:123629/1‑149 (MQ=255)                                                                                                           aCTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTAGCCCCACTGACCGATGCATCCGCAAGCGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGCCCGGGCCAGAGCCTGaacatcctc                                >  2:227079/1‑142 (MQ=255)                                                                                                             tGGCGTAACATTATCCCGTGGCGTTATTAATGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGCACCGCCAGCGACCTGGAGATCTTCTGCCCGGGCCAGAGCCTGAAACTCATCtt                              <  1:590164/149‑1 (MQ=255)                                                                                                               gCGGAACAGTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGCCCGGGCCAGAGCCTGAAACTCATCtttt                            <  2:45033/149‑1 (MQ=255)                                                                                                                 gTAACATTATCCCGTGGCGTCATTAACGACAGGCTTcctgtcgttaatgacgccacgggataatgttacgccagttaaactcgaaggggcggtccggattac                                                                         <  1:511540‑M2/102‑67 (MQ=255)                                                                                                                 gTAACATTATCCCGTGGCGTCATTAACGACAGGCTTcctgtcgttaatgacgccacgggataatgttacgccagttaaactcgaaggggcggtccggattac                                                                         >  2:511540‑M2/1‑36 (MQ=255)                                                                                                                  tAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTCCCCACAGCGGCCTGGAGATCTTCTGCCCGGGCCAGAGCCTGAAACTCATCTTTTGAc                         >  1:882437/1‑149 (MQ=255)                                                                                                                  tAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGc                                                                              >  2:44170/1‑96 (MQ=255)                                                                                                                  tAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGc                                                                              <  1:44170/96‑1 (MQ=255)                                                                                                                  tAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGCCCgg                                                    <  2:558838/122‑1 (MQ=255)                                                                                                                  tAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGCCCgg                                                    >  1:558838/1‑122 (MQ=255)                                                                                                                  tAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGCCCGGGCCCGAGCCTGAAACTCATCTTTTGAc                         >  2:395753/1‑149 (MQ=255)                                                                                                                       ttATCCCGTGGCGTCATTAACGACAGGCTTcctgtcgcgccacgggataatgttacgccagttaaactcgaaggggcggtccggattaccgatagcgcgacattgactctgggaaatggcgtcgataccacgcttgccgacctgacggc                    <  2:807639‑M2/149‑120 (MQ=255)                                                                                                                          tCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACAATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGCCCGGGCCAGAGCCTGAAACTCATCTTTTGACCGCCCAAg                 >  1:404014/1‑149 (MQ=255)                                                                                                                           cccGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGCCCGGGCCAGAGCCTGAAACTCATCTTTTGACCGCCCAAgg                <  1:779800/149‑1 (MQ=255)                                                                                                                           cccGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGCCCGGGCCAGAGCCTGAAACTCATCTTTTGACCGCCCAAgg                <  1:779797/149‑1 (MQ=255)                                                                                                                                 ggtgaaTTAACGGCAGGCTTGTGGTCGCGCCGCTGACCGATGCGTCCGCCAGCGTACCTGCGGAGACGATTGCCGTACTGCCAGCGACCTGGAGATCTTCTGCCCGGGCCAGAGCCTGAAACTCATCTTTTGACGGCCCAAGGGTatat          <  2:410415/144‑1 (MQ=255)                                                                                                                                   gTCATTAACGTCAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGCCCGGGCCAGAGCCTGAAACTCATCTTTTGACCGCCCAAGGGTATATTg        <  1:289460/149‑1 (MQ=255)                                                                                                                                     cATTAACGACAGGCTTCCTGTCGCGCCACTGATCGATGCATCCTCCAGCGTACTGTCGTAGACCATTGCCGTACCGCCAGCTACCTGGAGATCTTCTGCCCGGGCCAGAGCCTTAAACTCATCTTTTGACCGCCCAAGGGTATATTGcc      <  2:254566/149‑1 (MQ=255)                                                                                                                                       ttAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGGAGAGATTCTGCCCGGACCGCATCGTTAAACTCATCTTTTGACCGCCCAAGGGTACGTTGcacc    >  2:94075/1‑146 (MQ=255)                                                                                                                                         aaCGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGTCCGGGCCAGAGCCTGAAACTCATCTTTTGACCGCCCAAGGGTATATTGCCCGcc  >  2:677704/1‑149 (MQ=255)                                                                                                                                                ggCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGATGATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGCCCGGGCCAGAGCCTGAAACTCATCtttt                            <  1:236660/116‑1 (MQ=255)                                                                                                                                                ggCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGCCCGGGCCAGAGCCTGAAACTCATCtttt                            >  2:236660/1‑116 (MQ=255)                                                                                                                                                    |                                                                                                                                          GACACTGCCCCGGCTGGCAGCCGTCAGGTCGGCAAGCGTGGTATCGACGCCATTTCCCAGAGTCAATGTCGCGCTATCGGTAATCCGGACCGCCCCTTCGAGTTTAACTGGCGTAACATTATCCCGTGGCGTCATTAACGACAGGCTTCCTGTCGCGCCACTGACCGATGCATCCGCCAGCGTACCTGCGTAGACGATTGCCGTACCGCCAGCGACCTGGAGATCTTCTGCCCGGGCCAGAGCCTGAAACTCATCTTTTGACCGCCCAAGGGTATATTGCCCGCC  >  NC_000913_3_bme_pgi/2779610‑2779894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.