Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
MC JC	NC_000913_3_bme_pgi	1,978,503	Δ776 bp	100%		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_bme_pgi	1978503–1979268	1979278	11–776	62 [0]	[0] 62	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 1978502	0 (0.000)	55 (1.250)	39/256	NT	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913_3_bme_pgi	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

AAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC  >  NC_000913_3_bme_pgi/1978357‑1978644                                                                                                                                                  |                                                                                                                                               aaaTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtat                                                                                                                                             <  1:631660‑M1/149‑4 (MQ=255)   aTGGGTCTGTGGACTTATCGAAGTTGTTTCCTATATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACATAACACTCAATTACTTAACATAAATGtataa                                                                                                                                           <  2:93063‑M1/149‑6 (MQ=255)     gggTCTTTACACTTATGTAAGATTTGACCTAAATCGACGCAACTGTACTCGCAACTACACGCACATCCACCGGAGGGTGGCTGCTATCTTCAATAATGCCTGATCCAGATCCCACAAAACTCTCAATTACTTAACATAAATgtacaagt                                                                                                                                         <  2:575296/149‑8 (MQ=255)          tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCGGACAAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                                                                    >  1:744489‑M1/1‑137 (MQ=255)          tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                                                                    >  2:866935‑M1/1‑137 (MQ=255)          tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatac                                                                                                                                    >  1:450347‑M1/1‑137 (MQ=255)          tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGAGGGCTGCGATTTTCAATACTCCCCCATGCACATCACACAAAACACACAATTACTTAACATAAATGtataagtcatac                                                                                                                                    >  2:317639‑M1/1‑137 (MQ=255)                     cTAATATTTTTCTTAAATCGGCGCAACTGTACTCGTCACTACACGCACATACAAAGAAGGATGGATGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgt                                                                                                                         <  2:680457‑M1/149‑24 (MQ=255)                     cTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACAGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                         <  2:199684‑M1/149‑24 (MQ=255)                      tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGCGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTAAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                                                                        >  1:612784‑M1/1‑125 (MQ=255)                      tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtaatacttttgttttggg                                                                                                                        >  1:463454‑M1/1‑125 (MQ=255)                      tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGAGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttttgg                                                                                                                        >  2:232872‑M1/1‑125 (MQ=255)                          aTTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGAGTGATGCAAATCACACAAAAAACTCAATTACTTAACATAAATGaataagccataattttgtttcgggtata                                                                                                                    >  2:655016‑M1/1‑121 (MQ=255)                          aTTTTTCCTAAATCGACGCAACTGCACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgta                                                                                                                    >  1:779255‑M1/1‑121 (MQ=255)                          aTTTTTCCTAAATCAACGCAACTGCACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgta                                                                                                                    >  1:779004‑M1/1‑121 (MQ=255)                                  tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatc                                                                                                            <  1:441556‑M1/149‑37 (MQ=255)                                  tAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgatttgggtgtatttcaatc                                                                                                            >  1:632816‑M1/1‑113 (MQ=255)                                      tCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtt                                                                                                        >  2:754777‑M1/1‑109 (MQ=255)                                         aCGCAACTGTACTCGTCACTACACTCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaa                                                                                                     <  1:674125‑M1/149‑44 (MQ=255)                                           tcaACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagttacactttctttttgggtgtatttcaatctgttaaaaa                                                                                                   <  1:892238‑M1/148‑46 (MQ=255)                                           ggaactGTACTCGACACTAAACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                   <  2:626734‑M1/147‑46 (MQ=255)                                             aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCAGACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtattagatgtatttcaatatgataaaaagt                                                                                                 >  2:284672‑M1/1‑102 (MQ=255)                                             aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagt                                                                                                 >  1:756477‑M1/1‑102 (MQ=255)                                             aaCTGTACTCGTCACTACACGCACATACAACGGAGGAGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtatatttcaatctgttaccaacg                                                                                                 >  2:444072‑M1/1‑102 (MQ=255)                                                 gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                             <  1:819274‑M1/149‑52 (MQ=255)                                                 gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                             <  1:218656‑M1/149‑52 (MQ=255)                                                    cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc                                                                                          <  2:868084‑M1/149‑55 (MQ=255)                                                     tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttctggctgtattacaatatattaaaaagcttttctca                                                                                         >  2:806669‑M1/1‑94 (MQ=255)                                                     tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATAACACAAAAGCCTCAATTACTTAACATAAATGtataaatcatacgtttattttgggtgtatgtcaatctgttaaaaaatttttcgct                                                                                         >  1:525097‑M1/1‑94 (MQ=255)                                                        tccctacACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACTCTCAATTACTTAACATTAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacg                                                                                      <  1:270452‑M1/146‑59 (MQ=255)                                                                      tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatatgttaaaaagtttttcgctccgctagcaggcacaaa                                                                        >  2:510132‑M1/1‑77 (MQ=255)                                                                      tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgctttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                        >  2:679316‑M1/1‑77 (MQ=255)                                                                       aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                                                                           <  1:621065‑M1/129‑54 (MQ=255)                                                                       aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                                                                           >  2:621065‑M1/1‑76 (MQ=255)                                                                          aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaa                                                                    >  2:124175‑M1/1‑73 (MQ=255)                                                                           cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                                   >  1:446426‑M1/1‑72 (MQ=255)                                                                              aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacag                                                                <  1:113132‑M1/149‑81 (MQ=255)                                                                                        cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagattttcgctactctagccagccaaaatggaaaagcaataatcca                                                      >  2:226552‑M1/1‑59 (MQ=255)                                                                                          aTTTTCAATAATGCGTGATGCAGATCAAAAAAATCATTCAATTACTTAACATAAATGtataagttatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa                                                    <  2:721474‑M1/149‑93 (MQ=255)                                                                                            tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttaaatatgttaaaaagtttttagctacgatagcaagcaaaaatgaaacaggaataatagaaatg                                                  >  1:742661‑M1/1‑55 (MQ=255)                                                                                               cAATAATGCATGATGAAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgtgtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaacgaaacaggaataatcgaaatggga                                               <  2:553761‑M1/149‑98 (MQ=255)                                                                                                        gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggatgtattttaatctgttaaaaactttttcgctacgctagcaagcaaaaataacacaggaataatcgaaatggtatgttgcgac                                      >  2:337074‑M1/1‑43 (MQ=255)                                                                                                          gATGCAGATTATACAAAATACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaacagtttctcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                                    <  1:849432‑M1/149‑109 (MQ=255)                                                                                                          gATGCAGATCACACAAAATACTTAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaattttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                                    <  1:393741‑M1/149‑109 (MQ=255)                                                                                                          gATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                                    <  2:549031‑M1/149‑109 (MQ=255)                                                                                                              cAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                                <  1:820522‑M1/149‑113 (MQ=255)                                                                                                                gATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtaaaa                              >  1:86839‑M1/1‑35 (MQ=255)                                                                                                                 aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggaagttacgcacagtcaaaa                             >  2:890852‑M1/1‑34 (MQ=255)                                                                                                                  ttacacaaaACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaat                            <  1:32511‑M1/147‑117 (MQ=255)                                                                                                                      acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact                        >  2:785851‑M1/1‑29 (MQ=255)                                                                                                                      aaaaaacaCTCAATTACTTAACATAAATGtataagttatacttttgttttaggtgtatttcaatctgttaaaaagaatttcgcgacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact                        <  1:123227‑M1/147‑121 (MQ=255)                                                                                                                         aaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctccgataggaagcaaaaattaaaaaggaataatcgaaatgggatgttgcgcacagtcaaaataacttca                     >  2:802244‑M1/1‑26 (MQ=255)                                                                                                                               gcaATTACATAAAATAAATGaaatagtcatagttttgttttcggtgtatttcaatctgttaaaaagtttttcgctaggctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaa               <  2:93153‑M1/148‑130 (MQ=255)                                                                                                                                 aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctactctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataaatcaccgtaaata             >  1:514366‑M1/1‑18 (MQ=255)                                                                                                                                  aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataa            >  1:483245‑M1/1‑17 (MQ=255)                                                                                                                                   ttACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgc                                         <  2:168327‑M1/119‑104 (MQ=255)                                                                                                                                   ttACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgc                                         >  1:168327‑M1/1‑16 (MQ=255)                                                                                                                                     aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaaaaatca         >  1:762385‑M1/1‑14 (MQ=255)                                                                                                                                      ttgacaataaatgaataagttatacttttgttttggttgtatttctatcttttaaaaatttttttgctacgctagaaagccaaaatgaaacaggaaaaatcgaaaggggatgttgcgcacagtcaaaataactcaccgtaaataatcat        <  1:450200‑M1/143‑137 (MQ=255)                                                                                                                                      cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactacccgtaaacaaacat        >  2:668448‑M1/1‑13 (MQ=255)                                                                                                                                      cTTAACATAAATGtaaaagttacacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcatcgtaaataatcat        <  2:446426‑M1/149‑137 (MQ=255)                                                                                                                                            aTAAATGtataagtcatactttttttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagaaaaaatgaaaaaggaataatcgaaatgggatgttgcgcacagtcaaaataaattacagtaaataatcatctgctc  >  2:534165‑M1/1‑7 (MQ=255)                                                                                                                                                  |                                                                                                                                               AAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGC  >  NC_000913_3_bme_pgi/1978357‑1978644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑