New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 1536866	40 (1.340)	4 (0.140)	4/266	3.6	9.9%	coding (444/696 nt)	narW	nitrate reductase 2 (NRZ), delta subunit (assembly subunit)
	?	NC_000913_3_bme_pgi	= 1536879	36 (1.290)					coding (431/696 nt)	narW	nitrate reductase 2 (NRZ), delta subunit (assembly subunit)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCAATAAACTTCACCTGTTCCTCTTCCCACACTGCATCAAGCGCCTGGCGGGTGTCATCGCGCTCTTCGCTGTTTACTTGTTTTGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCAACATTGAGCAATCCTTCTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAAT  >  NC_000913_3_bme_pgi/1536722‑1537014                                                                                                                                                 |                                                                                                                                                     ttCAATAAACTTCACCTGTTCCTCTTCCCACACTGCATCAAGCGCCTGGCGGGTGTCATCCCGCTCTTCGCTGTTTCCTTGTTTTGTGACACTGTCCCTTGCAAGGGCGCTTCCCGCCAGTTGCAGCATAGCATCAAACCACCCGTccc                                                                                                                                                  >  2:130539/1‑149 (MQ=255)       aaaCTTCGCCTGTTCCTCTGCCCACCCTGCATCAAGCGCATGGCGGGTGTCATCGCGCTCTTCGCTGTTTACTTGTTTTGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTg                                                                                                                                            <  2:434978/149‑1 (MQ=255)        aaCTTCACCTGTTCCTCTTCCCACACTGCATCAAGCGCCTGGCGGGTGTCATCGCGCTCTTCGCTGTTTACTTGTTTTGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACTACGCGTACCACGGTGc                                                                                                                                           <  1:460212/149‑1 (MQ=255)        aaCTTCACCTGTTCCTCTTCCCACACTGCATCAAGCGCCTGGCGGGTGTCATCGCGCTCTTCGCTGTTTACTTGTTTTGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGc                                                                                                                                           <  2:311280/149‑1 (MQ=255)        aaCTTCACCTGTTCCTCTTCCCACACTGCATCAAGCGCCTGGCGGGTGTCATCGCGCTCTTCGCTGTTTACTTGTTTTGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGc                                                                                                                                           <  1:34594/149‑1 (MQ=255)           ttCCCCTGTTCCTCTTCCCACACTGCATCAATCGCCTGGCGGGTGTCATCGCGCTCTTCGCTGTTTACTTGTTTTGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTc                                                                                                                                        <  2:1880/149‑1 (MQ=255)             cACCTGTTCCTCTTCCCACACTGCATCAAGCGCCTGGCGGGTGTCATCGCGCTCTTCGCTGTTTACTTGTTTTGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTcgc                                                                                                                                      <  1:194431/149‑1 (MQ=255)               ccTGTTCCTCTTCCCACACTGCATCAAGCGCCTGGCGAGTGTCATCGCGCTCTTCGCTGTTTACTTGTTTCGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCgt                                                                                                                                    <  1:487770/149‑1 (MQ=255)                           cccACACGGCATCAAGCCGCTGGCGGGAGTGCGCGCGCTCTTCGGTGTTTCCTTGTTTTGTGATACTGTCTCTTGAAGGGTAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCgc                                                                                                                        <  2:347674/149‑2 (MQ=255)                              acacTGCATCAAGCGCCTGGCGGGTGTCATCGCGCTCTTCGCTGTTTACTTGTTTTGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCg                                                                                                                     >  1:88697/1‑149 (MQ=255)                                 cTGCATCAAGCGCCTGGCGGGTGTCGTCGCGCTCTTCGCTGTTTACTTGTTTTGTGACACTGTCGCTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGGGCATCAAACAACGCGTACCACGGTCAATCGCGTTGTTTTAAGCGACCGCCa                                                                                                                  >  1:10409/1‑149 (MQ=255)                                    cATCAAGCGCCTGGCGGGTGTCATCGCGCTCTTCGCTGTTTACTTGTTTTGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGc                                                                                                               <  2:522330/149‑1 (MQ=255)                                    cATCAAGCGCCTGGCGGGTGTCATCGCGCTCTTCGCTGTTTACTTGTTTTGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGc                                                                                                               <  1:523757/149‑1 (MQ=255)                                           cgcCTGGCGGGTGTCATCGCGCTCTTCGCTGTTTACTTGTTTTGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGa                                                                                                        <  2:201231/149‑1 (MQ=255)                                            gcCTGGCGGGTGTCATCGCGCTCTTCGCTGTTTACTTGTTTTGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCCGGGCGAg                                                                                                       >  2:452102/1‑149 (MQ=255)                                              cTGGCGGGTGTCATCGCGCTCTTCGCAGTTTACTTGTTTTATGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACCACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCCACCGCCAAGCAGGGCGAggg                                                                                                     >  2:401986/1‑148 (MQ=255)                                               tGGCGGGTGTCATCGCGCTCTTCGCTGTTTACTTGTTTTGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGAt                                                                                                    <  2:229155/149‑1 (MQ=255)                                                 gCGGGTGTCATCGCGCTCTTCGCTGTTTACTTGTTTTGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCg                                                                                                  <  1:67382/149‑1 (MQ=255)                                                   gggTGTCACCGCGCCTTTCGCTGTTTACTTGTTTTGGGAAAATGTCACTTGAAAGGGAGCTTCCCGCCCGTTGCAGCAGAGCATCAAACCACGCGTACCCCGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGgc                                                                                                <  2:24743/149‑1 (MQ=255)                                                   ctgtgtCATCGCGGCCTTCGCAGAATACTTGTTATGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCCCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGgc                                                                                                <  1:14107/147‑1 (MQ=255)                                                          aTCGCGCTCTTCGCTGTTTACTTGTTTTGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCCACCGCCAAGCCGGGCGAGGATCCGCGCCACAt                                                                                         >  2:47775/1‑149 (MQ=255)                                                             gcgcTCTTCGCTGTTTACTTGTTTTGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCAACATTGa                                                                                      <  2:205278/149‑1 (MQ=255)                                                                        tGTTTACTTGTTTTGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCAACATTGAGCAATCcttct                                                                           <  1:223106/149‑1 (MQ=255)                                                                                      gtgCCAGTGGCACGTGAAAGGGAGCTTCCCGCCATTTGCAGCAGAGCATCAACCAACGCGTACCACGGTGCCTCGCTGTGTTTCACGCGACCGCCAAGCAGGGCGAGGATCAGCGCTACATGGATCAATCCTTTTTTCGCCTGATCGTc                                                             <  2:43482/149‑1 (MQ=255)                                                                                       tgACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCAACATTGAGCAATCCTTCTTTCGCCTGATCGTCa                                                            >  1:6496/1‑149 (MQ=255)                                                                                                cACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAATCGCCCGCCAAGCAGGGCGAGGTTCGGCGCAACATTGAGCAATCCTTCTTTCATCTGATCGGCAGGCAGtcag                                                   >  1:55427/1‑146 (MQ=255)                                                                                                      aaaGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCAACATTGAGCAATCCTTCTTTCGCCTGATCGTCAGGCAGTACGCTTaaa                                             <  1:355421/149‑1 (MQ=255)                                                                                                           gAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCAACATTGAGCAATCCTTCTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTc                                        <  2:359922/149‑1 (MQ=255)                                                                                                               ttCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCAACATTGAGCAATCCTTCTTTCGCCTGATCGTCAGGCCGTACGCCTAAATACCCCAGa                                    >  2:407165/1‑149 (MQ=255)                                                                                                               ttCCCGCCAGGTGCAGCAGAGCATCAAACAACGCGTACCCCGGTCCCTCGGGGTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCAACATTGAGCAATCCTTCTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGa                                    <  2:505383/149‑1 (MQ=255)                                                                                                                      cAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCAACATTGAGCAATCCTTCTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCg                             <  1:268426/149‑1 (MQ=255)                                                                                                                         ttGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCAACATTGAGCAATCCTTCTTTCGCCTGATCGTCAGGCAGTACGCTTCAATACTCCAGATACAGCGGTa                          <  1:473237/149‑1 (MQ=255)                                                                                                                         ttGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCAACATTGAGCAATCCTTCTTTCGCCTGATCGGCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTa                          <  2:247680/149‑1 (MQ=255)                                                                                                                            cagcagAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCAACATTGAGCAATCCTTCTTTCGCCTGATCGTCAGGCAGTCCGCTTAAATACTCCAGATACCGCGGTACAt                       >  2:243730/1‑149 (MQ=255)                                                                                                                                agagCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCAACATTGAGCAATCCTTCTTTCGCCTGACCGTCAGGCAGTACGCTTAAATACCCCAGATACAGCGGTAGATAATc                   >  2:492513/1‑149 (MQ=255)                                                                                                                                     ttaaaaCAACGCGAGGCACCGTGGTACGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCGCCATTGAGCAATCCTTCTTTCCCCCGATCGTCGGGCAGTACGCTTAAATCCTCCAGCGACAGAGGTAGATACACGGGCa              >  2:295198/4‑149 (MQ=21)                                                                                                                                     aTCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCAACATTGAGCAATCCTTCTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCa              <  1:402663/149‑1 (MQ=255)                                                                                                                                           caacGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCAACATTGAGCAATCCTTCTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTccc        >  2:439612/1‑149 (MQ=255)                                                                                                                                            aacGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCAACATTGAGCAATCCTTCTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCg       >  2:145948/1‑149 (MQ=255)                                                                                                                                                 gTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCAACATTGAGCAATCCTTCTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGAGCAGTTCCCGACAAt  >  1:210358/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     TTCAATAAACTTCACCTGTTCCTCTTCCCACACTGCATCAAGCGCCTGGCGGGTGTCATCGCGCTCTTCGCTGTTTACTTGTTTTGTGACACTGTCACTTGAAAGGGAGCTTCCCGCCAGTTGCAGCAGAGCATCAAACAACGCGTACCACGGTGCCTCGCGTTGTTTTAAGCGACCGCCAAGCAGGGCGAGGATCGGCGCAACATTGAGCAATCCTTCTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAAT  >  NC_000913_3_bme_pgi/1536722‑1537014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.