| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 3652866 = | NA (NA) | 5 (0.180) | 4/268 | 3.7 | 19.5% | coding (333/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913_3_bme_pgi | 3828131 = | 22 (0.730) | coding (535/1206 nt) | gltS | glutamate transporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCAGATAGCAATCAGCGCGATAGTTTCAATCAGCACCAACGAGGTGATCATGCGTCCCACATCCGGCTTTTCAAACGCCGTCGGGACTTCCTGGTCATCCGGAATACCGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGAACGTTGCACAGGCCATCGCCACTTCCGTCGCATTGGTGAAGCCATAACGTTCAATGAACAATTTACTCCACGCAGCGCCCGTACCGTGACCGCCGGAAAGAGTAATAGA > NC_000913_3_bme_pgi/3827985‑3828275 | gCAGATAGCAATCAGCGCGATAGTTTCAATCAGCACCAACGAGGTGATCATGCGTCCCACATCCGGCTTTTCAAACGCCGTCGGGACTTCCTGGTCATCCGGAATACCGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCg < 2:289263/149‑1 (MQ=255) caccaCGAGGTGATCATGCGTCCCACATCCTGCTTTTGCAACGCCGTCGGGACTTCCTGGTCATCCGGAATACCGTTCGGCGGGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGaa < 2:8303/145‑1 (MQ=255) cAACGAGGTGATCATGCGTCCCACATCCGGCTTTTCAAACGCCGTCGGGACTTCCTGGTCATCCGGAATACCGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGAACg > 1:285523/1‑149 (MQ=255) gAGGTGATCAGGCGTCCCACATCCGGCTTTTCAAACGCCGTCGGGACTTCCTGGTCATCCGGAATACCGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGCACGTTGc < 2:197971/149‑1 (MQ=255) gTGATCATGCGTCCCACATCCGGCTTTTCAAACGCCGTCGGGACTTCCTGGTCATCCGGAATACCGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGAACGTTGcaca > 1:12048/1‑149 (MQ=255) ttaTCATGCTGCCCATATGCGGCTTTTCAAACGCCGTCGGGACTTCCTGGTCATCCGGAATACCGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGAACGTTGCACAg < 2:98596/147‑1 (MQ=255) aTCATGCGTCCCACATCCGGCTTTTCAAACGCCGTCGGGACTTCCTGGTCATCCGGAATACCGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGAACGTTGCACAGGc > 1:25296/1‑149 (MQ=255) cacaTCCGGCTTTTCAAACGCCGTCGGGACTTCCTGGTCATCCGGAATACCGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGAACGTTGCACGGGCCATCGCCACtt > 1:183203/1‑149 (MQ=255) cGGCTTTTCAAACGCCGTCGGGACTTCCTGGTCCTCCGGAATACCGTTCGGCGTGGCGGAGTGTTTCCCCCGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCACCACCAGACCGAACTTGTCACAGGCCATCCCAACTTCCGTCg > 1:378155/1‑149 (MQ=255) ggCTTTTCAAACGCCGTCGGGACTTCCTGGTCATCCGGAATACCGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGAACGTTGCCCAGGCCATCGCCACTTCCGTccc > 1:262567/1‑147 (MQ=255) ttttCAAACGCCGTCGGGACTTCCTGGTCATCCGGAATACCGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATc > 1:152411/1‑93 (MQ=255) ttttCAAACGCCGTCGGGACTTCCTGGTCATCCGGAATACCGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATc < 2:152411/93‑1 (MQ=255) cGCCGTCGGGACTTCTGGGTCATCCGGAATACCGTTCGGCGCGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGAACGTTGCACAGGCCATCGCCACTTCCGTCGCATTGGTGAAGc < 2:139592/149‑1 (MQ=255) gTCGGGACTTCCTGGTCATCCGGAATACCGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGAACGTTGCACAGGCCATCGCCACTTCCGTCGCATTGGTGAAGCCATa < 2:285523/149‑1 (MQ=255) gggtaCTTCCTGGTCATTGGGAATACCGTTCGGGGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGTACCAGACCGAACGTTTCACAGGCCATCGCCACTTCCGTCGCATTGGTGAAGCCATAAc < 1:316020/145‑1 (MQ=255) ggACTTCCTGGTCATCCGGAATACCGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGAACGTTGCACAGGCCATCGCCACTTCCGTCGCATTGGTGAAGCCATAACGt > 1:394154/1‑149 (MQ=255) tGGTCATCCCGAATACCGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGAACGTTGCACAGGCCATCGCCACTTCCGTCGCATTGGTGAAGCCATAACGTTCAATGaa < 1:382542/149‑1 (MQ=255) ccGGAATACCGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGAACGTTGCACAGGCCATCGCCACTTCCGTCGCATTGGTGAAGCCATAACGTTCAATGAACAATTTa < 2:310506/149‑1 (MQ=255) aCCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCAAGCACCAGACCGAACGTTGCACAGGCCATCGCCACTTCCGTCGCATTGGTGAAGCCATAACGTTCAATGAACAATTTACTCCACGCAGCGCCCGTCCCGTGACGGCCGGa > 1:491650/1‑149 (MQ=255) cAGATAGCGCGCCACCGGACCGCCGATCTAGCCGCCCAGGACCAGTCCGGAGGTTGGGCAGGCCATCGCCATTTGCGTAGCATTGTGGTAGCCATAACGTTCAAGGAACAACTTCCTGCACGCGGCGTGCGTACGGTCACCGCCGGaag > 2:518572/1‑148 (MQ=255) gATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACTATTCCGAACGTTGCACAGGCCATCGCCACTTCCGTCGCATTGGTGAAGCCATAACGTTCAATGAACAATTTACTCCACGCAGCGCCCGTACCGTGACCGCCGGAAaga < 1:98410/149‑1 (MQ=255) gcCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGAACGTTGCACAGGCCATCGCCACTTCCGTCGCATTGGTGAAGCCATAACGTTCAATGAACAATTTACTCCACGCAGCGCCCGTACCGTGACCGCCGGAAAGAGTAATAGa > 1:470873/1‑149 (MQ=255) | GCAGATAGCAATCAGCGCGATAGTTTCAATCAGCACCAACGAGGTGATCATGCGTCCCACATCCGGCTTTTCAAACGCCGTCGGGACTTCCTGGTCATCCGGAATACCGTTCGGCGTGGTGGAGTGTTTCACCAGATAGCGCGCCACCGGACCGCCAATCAAGCCGCCCAGCACCAGACCGAACGTTGCACAGGCCATCGCCACTTCCGTCGCATTGGTGAAGCCATAACGTTCAATGAACAATTTACTCCACGCAGCGCCCGTACCGTGACCGCCGGAAAGAGTAATAGA > NC_000913_3_bme_pgi/3827985‑3828275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |