New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	111477 =	NA (NA)	8 (0.200)	6/276	4.8	32.0%	noncoding (48/200 nt)	RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site	RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site
	?	NC_000913_3_bme_pgi	2304729 =	17 (0.430)					noncoding (313/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
Rejected: Coverage evenness skew score above cutoff.

GGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGC  >  NC_000913_3_bme_pgi/111329‑111625                                                                                                                                                     |                                                                                                                                                     ggTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATg                                                                                                                                                      >  1:679393/1‑149 (MQ=255)  gTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGc                                                                                                                                                     >  2:318165/1‑149 (MQ=255)  gTAAAGAAGGGCAACCCGGGGAGTGGATGTCGCTGGTCGGTCTTAAGGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATACGGCGTTTTCGCCGCATCCGACATTCGCACACGATGc                                                                                                                                                     <  2:81291/149‑1 (MQ=255)      agaagGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGa                                                                                                                                                 <  2:548264/149‑1 (MQ=255)        aagGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATg                                                                                                                                               >  2:728470/1‑149 (MQ=255)           ggCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGa                                                                                                                                            <  1:595180/149‑1 (MQ=255)             cAACCCGGTGAGTGGATGGCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGCCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACg                                                                                                                                          <  2:105518/149‑1 (MQ=255)                  cGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGgc                                                                                                                                     >  1:289288/1‑149 (MQ=255)                         tGGATGTCGCTGGTCGGTCTTAATAACCATAGTATTGCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGAATCCGAAATTCGAACAAGATGCCTGATGCGGCGTTGGCGGGTCtt                                                                                                                              >  2:526079/1‑149 (MQ=255)                           gATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTAt                                                                                                                            <  2:201850/149‑1 (MQ=255)                              gTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTGAGATAAGGCGTTTTCGCAGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAg                                                                                                                         >  1:676953/1‑149 (MQ=255)                              gTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAg                                                                                                                         >  1:683489/1‑149 (MQ=255)                                            ttAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGAttt                                                                                                           <  2:683489/149‑1 (MQ=255)                                            ttAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGAttt                                                                                                           >  2:415727/1‑149 (MQ=255)                                                tGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATTAGGCCTAAAGGGATTTCTaa                                                                                                       <  1:728470/149‑1 (MQ=255)                                                tGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTaa                                                                                                       <  2:422096/149‑1 (MQ=255)                                                   cGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGa                                                                                                                                                 <  1:274046/104‑1 (MQ=255)                                                   cGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGa                                                                                                                                                 >  2:274046/1‑104 (MQ=255)                                                    gatgatTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCa                                                                                                   >  1:684303/1‑149 (MQ=255)                                                     atgatTTTCCGCCAGCCAATGACCCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCAt                                                                                                  <  1:224281/149‑1 (MQ=255)                                                      tgatTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTACTAACTGAtt                                                                                                 >  1:643312/1‑149 (MQ=255)                                                               gccagccaATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAAttt                                                                                        <  2:315831/149‑1 (MQ=255)                                                                      aaggAACGGGTGATGTCGAAGCGTAAACGTGTGTAGGTCAGATAAGGCGGTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTg                                                                                 <  2:306458/146‑1 (MQ=37)                                                                           aCCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGCTTTCTAACTCATTGATAAATTTGTTTTTGTAGGt                                                                            >  1:641189/1‑149 (MQ=255)                                                                            ccGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGc                                                                                                                       >  1:721147/1‑105 (MQ=255)                                                                            ccGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGc                                                                                                                       <  2:721147/105‑1 (MQ=255)                                                                             cGGGAAATGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCCGATGCGACGCTGGCGCTTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCg                                                                          <  1:337725/149‑1 (MQ=255)                                                                                     gCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGc                                                                  <  1:560655/149‑1 (MQ=255)                                                                                       gAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGt                                                                >  2:697810/1‑149 (MQ=255)                                                                                             tAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCAcgc                                                          <  1:413222/149‑1 (MQ=255)                                                                                             tAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGAACAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCAcgc                                                          <  1:508625/149‑1 (MQ=255)                                                                                                    cTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATcc                                                   >  1:176744/1‑149 (MQ=255)                                                                                                     tGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCg                                                  >  2:393484/1‑149 (MQ=255)                                                                                                           tcggATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAttt                                            <  2:588909/146‑1 (MQ=255)                                                                                                           tCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCAtt                                                                                                 >  2:207072/1‑96 (MQ=255)                                                                                                           tCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCAtt                                                                                                 <  1:207072/96‑1 (MQ=255)                                                                                                           aacggtAAGTCTTTTTCGCCGGATCCGCCATTCGCATGCGATGGCTGATGCGACGCTGGGGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAttt                                            <  2:477472/144‑1 (MQ=38)                                                                                                                           cgccgcATCCGACATTCGCACACGATGCCTGATGCGTCGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGAt                            <  1:655997/149‑1 (MQ=255)                                                                                                                           cgccgcAGCCGACATTCGCACATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGAt                            <  2:295176/149‑1 (MQ=255)                                                                                                                             ccgcATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCAATGATAAATTTGTTTTGGTAGGTCGGATAAGGCGTTCACGCCCAATCCGCCCTTTGCCCAAGCTGCCTGATGc                          >  1:180366/1‑149 (MQ=38)                                                                                                                             ccgcATCCGACATTCGCACACGATGCCTGATGCGACGCTCCCGGCGCTGTTGAGGCCAAGAGTGCGTTCGAACTCATTGGTAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCAGACATTTGCACAAGATGCCTGATGc                          >  1:722842/1‑149 (MQ=25)                                                                                                                               gcATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGa                        <  1:415727/149‑1 (MQ=255)                                                                                                                                           ccgtcacGATGGCTGATGCTACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAATTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGt            <  2:275068/145‑1 (MQ=38)                                                                                                                                             cacaCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATa                                                                      >  1:34088/1‑89 (MQ=255)                                                                                                                                             cacaCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATa                                                                      <  2:34088/89‑1 (MQ=255)                                                                                                                                              ccacGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCtt         <  1:560341/148‑1 (MQ=255)                                                                                                                                              acacGATGCCTGATCCGACGCTGGAGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCtt         >  1:633477/1‑149 (MQ=255)                                                                                                                                                     gCCTGATGCGGCGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGc  <  2:354080/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GGTAAAGAAGGGCAACCCGGTGAGTGGATGTCGCTGGTCGGTCTTAATGCCGATGATTTTCCGCCAGCCAATGAACCGGTAATTGCGAAGCTTAAACGTCTGTAGGTCAGATAAGGCGTTTTCGCCGCATCCGACATTCGCACACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAAAGGGATTTCTAACTCATTGATAAATTTGTTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTTGCACAAGATGCCTGATGCGACGCTGTCCGCGTCTTATCAGGC  >  NC_000913_3_bme_pgi/111329‑111625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.