New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	2304471 =	40 (0.960)	9 (0.230)	6/276	4.8	24.6%	noncoding (55/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913_3_bme_pgi	2304729 =	17 (0.430)					noncoding (313/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
Rejected: Coverage evenness skew score above cutoff.

AGACAATGTAGATGTGAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAC  >  NC_000913_3_bme_pgi/2304324‑2304619                                                                                                                                                    |                                                                                                                                                     aGACAATGTAGATGTGAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGc                                                                                                                                                     >  2:388202/1‑149 (MQ=255)        gTAGATGGGAAGGACCGCGTCTGGAAGGCGGAAGAGAAAATGGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGc                                                                                                                                              <  1:517122/149‑1 (MQ=255)             tgtgAAGTACCGCGTCTGGAAGGCGGCAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGcgccgc                                                                                                                                         >  1:82853/1‑149 (MQ=255)             tgtgAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGc                                                                                                                                         >  1:256729/1‑149 (MQ=255)             tgtgAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGc                                                                                                                                         >  1:336091/1‑149 (MQ=255)               tgAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGcgg                                                                                                                                       >  1:704588/1‑147 (MQ=255)                gAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTgg                                                                                                                                      <  1:252466/149‑1 (MQ=255)                 aaGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGGCATCCAACGCCCGCGCCGGTTGCCTGATGCGACGCTGgc                                                                                                                                     >  1:39543/1‑149 (MQ=255)                 aaGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGgc                                                                                                                                     >  2:637357/1‑149 (MQ=255)                 aaGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGgc                                                                                                                                     >  1:131395/1‑149 (MQ=255)                      ccGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTc                                                                                                                                >  1:178364/1‑149 (MQ=255)                      ccGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTc                                                                                                                                <  1:731258/149‑1 (MQ=255)                      ccGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTc                                                                                                                                <  1:328461/149‑1 (MQ=255)                       cgcgTCGGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCTCTGACGAGCTGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCt                                                                                                                               <  1:719431/149‑1 (MQ=18)                         cgTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGCCGCTGGCGCGTCTTa                                                                                                                             >  1:203888/1‑149 (MQ=255)                               gAAGGCGGAAGAGAAAAGTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGTCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGc                                                                                                                       <  1:446300/149‑1 (MQ=255)                                     ggAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCCGGCCTacac                                                                                                                 >  1:552617/1‑149 (MQ=255)                                      gAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCGGATGCGACGCTGGCGCGTCTTACCAGGCCTCCAcc                                                                                                                >  1:17769/1‑149 (MQ=255)                                         gagaAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCt                                                                                                             <  2:515310/149‑1 (MQ=255)                                              aaTTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGaa                                                                                                        <  1:231160/149‑1 (MQ=255)                                                ttGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGAGACCCGAGCGCGGCCGATCAGGCCAACACCGCTGGGAAGt                                                                                                      >  2:499899/1‑149 (MQ=17)                                                   aCAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCg                                                                                                   >  2:443750/1‑149 (MQ=255)                                                                gcGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGt                                                                                      <  1:564864/148‑1 (MQ=255)                                                                   cTAAACTGCCGTGAAGTGCGCCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAg                                                                                   <  1:183623/149‑1 (MQ=255)                                                                    tacaCTGCCGTGAAGCGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCACCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGa                                                                                  <  1:615812/146‑1 (MQ=255)                                                                    tAACCTGCCGAGAAGTGCGGCACCGCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGa                                                                                  <  1:615547/149‑1 (MQ=255)                                                                    tAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGCCACCCCGCAGGTCGGa                                                                                  >  1:6345/1‑149 (MQ=255)                                                                       aCTGCCTTCAAGTGCGGCACCCCGTATGTCAGACAAGGCGTTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACACTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACaa                                                                               <  1:220351/149‑1 (MQ=14)                                                                           ccGTGAAGGGAGGCACCCGGAAGGTCAGACAAGTCGGTAAAGCCGCAAACGGCATCCAAGGCCCGAGCCGGTGGCCTGATGCGACGCTGGCGCGTATTATCAGGCATACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCg                                                                           <  2:57292/149‑1 (MQ=14)                                                                            cGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCgg                                                                          <  1:564704/149‑1 (MQ=40)                                                                                         aCCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTGTCAGGCCTACACCGCTGTGAAGTGCGCCACCCCGCAGGCCAGACAAGCCGGTTACGCCGCAccc                                                             >  1:200014/1‑149 (MQ=11)                                                                                                            gCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGGCATCCAACGCCCGAGcc                                          >  1:356786/1‑149 (MQ=255)                                                                                                              gggcACGCCCCATCCGAGATCCAACGCCCGAGCGGGTTGCCTGATGCGACGTTGGCGCGTCGTATCAGGCCTACACCGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCgg                                        <  2:256729/146‑1 (MQ=17)                                                                                                                  aCGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGc                                    <  1:37570/149‑1 (MQ=255)                                                                                                                   cgccgcATCCGACATCCAACGCCCGAGCCGGTTGCCGGATGCGACGCTGGCGCCTCTTATCAGGCCTACACCGCTGTGAAGTGCTGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGcc                                   <  1:637876/149‑1 (MQ=255)                                                                                                                        cATCCGACATCCAACGCCCGAGCCGGTGGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATg                              <  1:76575/149‑1 (MQ=255)                                                                                                                         aTCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTGCACCCCGTAGGTCAGATAAGGCGGTTAAGACGCATCCGACATCCAACGCCCGAGCCGGTTGCCTCATGc                             >  2:502942/1‑149 (MQ=11)                                                                                                                                    aaCGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGCCACCCCGTAGGTCAGCCAAGGCGGTCACGCAGCATCCGACATCTAACGCCCGAGACGGTTGCACGGTGCGACgcgcgcgc                  >  1:508121/1‑149 (MQ=11)                                                                                                                                        cccGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCCCTACACCGCGGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCt              <  1:438707/149‑1 (MQ=255)                                                                                                                                             gCCGGTTGCCTGATGCGAACCTGGCGGCTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGTGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCa         <  1:436949/149‑1 (MQ=17)                                                                                                                                                ggTGGCCCGATGCGACGCTCGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGTACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATAAggt      <  1:695737/149‑2 (MQ=17)                                                                                                                                                    gCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCAGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCAGGGCGAGCGCGGCGTATCGGGCCtgc  >  2:712926/1‑147 (MQ=14)                                                                                                                                                    |                                                                                                                                                     AGACAATGTAGATGTGAAGTACCGCGTCTGGAAGGCGGAAGAGAAAATTGACAACGCGGTAGTTCGCTAAACTGCCGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGGCACCCCGTAGGTCAGACAAGGCGGTCACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAC  >  NC_000913_3_bme_pgi/2304324‑2304619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.