| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 2304697 = | 22 (0.530) | 8 (0.200) | 6/276 | 4.8 | 29.7% | noncoding (281/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_bme_pgi | 2304729 = | 17 (0.430) | noncoding (313/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
ACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTAT > NC_000913_3_bme_pgi/2304550‑2304836 | aCGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGc < 1:388202/149‑1 (MQ=32) gcagtaTCTGACATCCGACGCCCGGGCCGGTTGCGTGATGGGACGCTGGCGCGTCTTAGCAGGCCTACACCGCTGCGCAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACCTCTAACGCCCAAGCCGGTTGCCt < 2:401438/144‑1 (MQ=11) cATCCGACAGCCAACGCCCGAGCCGGTTGCCTCATGCGACGCTCGCGCTTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATg < 1:502942/149‑1 (MQ=255) cctgcATCCAACTCCCGTGCCGGTGGCGTGAGGCGAAGTTGGCGAGGCTGAAGAGCCCTAAACCGCTGTGAAGTGCGCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGa < 2:203888/145‑1 (MQ=11) cAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCCGGCCGGTTGCCTGGTGCGACGCTGccg > 1:72474/1‑149 (MQ=255) cGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGt < 1:455847/149‑1 (MQ=32) gCCCGAGCCGGTTGCCTGATGGGACGGTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTGCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑c < 2:552617/149‑1 (MQ=9) cccGAGTCGGTTGCCTGATGCGACGCCGGCGCGTCTTATCAGGCAGACGCCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑Ct < 1:98140/149‑1 (MQ=11) cccGAGCCGGTTGCCTGATTCTACGCTGGCGCGTCTTATCAGGCCCAAACCGCCGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑Ct < 1:98219/149‑1 (MQ=11) tAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATc > 2:673942/1‑149 (MQ=32) aGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTACCGCCGTGGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATcc < 1:384150/149‑1 (MQ=255) ggTCGGATAAGGCGGTCACGCCGCATCCGACATCAAACCCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCa < 2:475131/149‑1 (MQ=255) gCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTACCAGGCCTACACCGCTCCGACGTGCTCCACCCCGTAGGTTGGATAAGGCGGGTGCGCCGCCTCCGACATCCCACCCCCGCGcc > 2:311843/1‑149 (MQ=11) gccgcATCCGACATCTAACCCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCTTCGGACATCGAACGTCCGAGCCGGTTGCCt < 1:712926/149‑1 (MQ=255) cATCCGACATCTAACGCCCGAGCGGGTTGCCTGATGCGACGCTGTCGCGT‑CTTATCAGGCCTACCCCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATCAGGCGGTCACGCCGCATCCGATATCCAACGTCGGAGCCGGTTGCTTGATg < 2:477012/149‑1 (MQ=11) cATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCTTGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATg < 1:505735/149‑1 (MQ=255) ccGACATCTAACGCCCCAGCCGGTTGCCTGATGCGACGCTGGAGAATACGCGTTA‑GCGTAGACCGCTGTGTAGGGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGa < 1:506274/149‑1 (MQ=14) aaCGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTAAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCgg > 1:89869/1‑127 (MQ=255) aaCGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTAAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCgg < 2:89869/127‑1 (MQ=255) cGCCCGAGGCGGGTGCCTGAGGCGACGGTGGCGCGT‑TTTTTGATGTCTATACCGCTGTGAAGTGCGCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGt < 2:336091/149‑1 (MQ=11) cAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGGAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGCCCGAGCCGCTTGCCTGATGCGACGCTCGCGCGTCTTa > 2:90155/1‑149 (MQ=255) aaGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTAt < 1:687327/149‑1 (MQ=38) | ACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTAT > NC_000913_3_bme_pgi/2304550‑2304836 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |