New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	2304722 =	17 (0.410)	9 (0.230)	7/276	4.3	35.8%	noncoding (306/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913_3_bme_pgi	2304817 =	NA (NA)					noncoding (401/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
Rejected: Coverage evenness skew score above cutoff.

CATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCG  >  NC_000913_3_bme_pgi/2304669‑2304943                                                                                                                                                      |                                                                                                                               cATCCGACATCTAACGCCCGAGCGGGTTGCCTGATGCGACGCTGTCGCGT‑CTTATCAGGCCTACCCCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATCAGGCGGTCACGCCGCATCCGATATCCAACGTCGGAGCCGGTTGCTTGATg                                                                                                                                <  2:477012/149‑1 (MQ=11) cATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCTTGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATg                                                                                                                                <  1:505735/149‑1 (MQ=255)    ccGACATCTAACGCCCCAGCCGGTTGCCTGATGCGACGCTGGAGAATACGCGTTA‑GCGTAGACCGCTGTGTAGGGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGa                                                                                                                             <  1:506274/149‑1 (MQ=14)               cGCCCGAGGCGGGTGCCTGAGGCGACGGTGGCGCGT‑TTTTTGATGTCTATACCGCTGTGAAGTGCGCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGt                                                                                                                  <  2:336091/149‑1 (MQ=11)                   cAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGGAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGCCCGAGCCGCTTGCCTGATGCGACGCTCGCGCGTCTTa                                                                                                              >  2:90155/1‑149 (MQ=255)                    aaGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTAt                                                                                                             <  1:687327/149‑1 (MQ=38)                               cTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTaccc                                                                                                  >  1:390289/1‑147 (MQ=255)                               cTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCACGTCTTATCAGGCCTgcac                                                                                                  >  1:461437/1‑149 (MQ=255)                                tGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTACCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAcc                                                                                                 <  2:643672/149‑1 (MQ=255)                                   ggCGACGGCGGCGCGG‑CTTATCCGGCCTACACCGCTGTGAAGTGCGCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCt                                                                                              <  2:719406/148‑1 (MQ=14)                                        cgcgccagcgT‑CGCATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGaa                                                                                         <  2:605300/142‑1 (MQ=255)                                                            gCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCAACCCAGCTCCGAAGAGCTCCACCCCGTCggac                                                                      >  2:116660/1‑147 (MQ=11)                                                            gCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCCCTCCCCCGCTCCGAAGCGCTCcccccccgcggtc                                                                      >  2:29410/1‑142 (MQ=11)                                                               tACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCCCTACACCGCTCTGAAGTGCTCCACCCCGTAGGTCGGa                                                                   >  1:221895/1‑149 (MQ=255)                                                                    cGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCCACCCCGCTCTGACGTCCTCCGCCCGGTGGGGCggcgacta                                                              >  2:319549/1‑143 (MQ=11)                                                                      cTGTGAAGTGCTCCCCCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCg                                                            <  1:311208/149‑1 (MQ=255)                                                                      cTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCg                                                            <  1:673942/149‑1 (MQ=255)                                                                              tGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGCGCAGTACCCCCCCCCGTAGGGCGGCTCCGGCGGCTAcgcc                                                    >  1:460255/1‑149 (MQ=14)                                                                                   cACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGCCGGTGGCGCGTCTTATCAGGCCTACACAGCTGTGGAGTGCTCCCCCCCGTAGGCCGGATGAGGCGGTTCcgccccgcc                                               >  1:44836/1‑144 (MQ=14)                                                                                   cACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGCTACGCCGCATc                                               >  1:69327/1‑149 (MQ=255)                                                                                         gTAGGTTGGACAAGGCGGTTACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACAt                                         <  1:335871/149‑1 (MQ=17)                                                                                            ggTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATCAGGCGGTTACGCCGCATCCGACATCtc                                      >  2:224737/1‑148 (MQ=255)                                                                                            ggTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGGCGGATCAGGCGGTTACGCCGCCTCCCACATCTa                                      >  2:578793/1‑149 (MQ=255)                                                                                                          gTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCATGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCGGTGAAGTGCTCCACCCCACAGGTCGGATAAGAAGGATACGCCGCATCCGACATCTAACGCCAAATCCgct                        >  2:559863/1‑147 (MQ=11)                                                                                                             aCGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATg                                                                                                                                <  2:149408/42‑1 (MQ=38)                                                                                                                   cATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATg               <  1:432274/149‑1 (MQ=32)                                                                                                                     tCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCATACACCGCTGTGAAGTGCTCCACCCCGTAGGTAGGATAAGGCGGTTACGCCGCATCCGACATCTACCGCCCACGCCGGGTGTCTGATgag             >  1:504520/1‑147 (MQ=11)                                                                                                                            tCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTACCGCCCAAGCCGATTGCCTGATGCGACGCTgg      >  1:336294/1‑149 (MQ=17)                                                                                                                             ctcatctCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGgc     <  1:519619/143‑1 (MQ=11)                                                                                                                                aCGTCCGAGCCGGTTGCCTGATGAGACGCTGGCGCGTCTTATCAGGCCAACACCGATGTGAAGTGATCCACCCCATAGGTCGGATCAGACGGTTCCGCCGCATCCCACATATTACGCCCGAGCCGGCTCCCTGATGCGACGCTGgcgcc  >  2:686572/1‑148 (MQ=11)                                                                                                                                                      |                                                                                                                               CATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCG  >  NC_000913_3_bme_pgi/2304669‑2304943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.