New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	2304722 =	17 (0.410)	8 (0.200)	6/276	4.8	33.1%	noncoding (306/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913_3_bme_pgi	= 2347320	NA (NA)					noncoding (161/203 nt)	REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences	REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences
Rejected: Coverage evenness skew score above cutoff.

TAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATACCACCTTTTCACAGACGAAAAATGATCAGCTCAAAGAACCGATGTTCTTTGGTCAGCCGGTCAACGTGGCTC  >  NC_000913_3_bme_pgi/2347173‑2347465                                                                                                                                                    |                                                                                                                                                  tAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCa                                                                                                                                                  >  1:690781/1‑149 (MQ=255)    aCGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGGCAACGCCTTATCCGGCCTCCGGCTCGGATTTGTTATCCTGATATAACGACCCAGCGTCGCATcc                                                                                                                                               >  2:165221/1‑148 (MQ=25)     cGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAg                                                                                                                                              <  1:188001/149‑1 (MQ=255)       ccTTACCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAGCGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGc                                                                                                                                            <  1:246661/149‑1 (MQ=255)        cTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGGTGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCCCATCAGGca                                                                                                                                           >  2:306367/1‑149 (MQ=255)        cTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGca                                                                                                                                           >  2:291295/1‑149 (MQ=255)                  cTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATgcgg                                                                                                                                 <  1:266077/149‑1 (MQ=255)                      ggCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTa                                                                                                                             >  1:492958/1‑149 (MQ=255)                      ggCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGAGgcggcgga                                                                                                                             >  1:206331/1‑147 (MQ=255)                            gTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGc                                                                                                                       <  2:657169/149‑1 (MQ=255)                                    gCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCCTCAGGCACAGGATGCGGCGTAAAATGCCTTATCCg                                                                                                               >  2:618138/1‑149 (MQ=255)                                    gCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCg                                                                                                               <  1:545801/149‑1 (MQ=255)                                       tGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCa                                                                                                            >  2:160193/1‑149 (MQ=255)                                       tGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCa                                                                                                            >  2:160182/1‑149 (MQ=255)                                       tGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCa                                                                                                            >  2:160397/1‑149 (MQ=255)                                            aGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCCTCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTaaa                                                                                                       <  1:185424/149‑1 (MQ=255)                                                gcgcCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTcc                                                                                                   <  2:518507/149‑1 (MQ=255)                                                   ccggCGTCGCATCAGGCTCCGGGTGCCGGAGGCAGCGTTAACGCATTATAACGTGGACGGTTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGGACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCaa                                                                                                <  1:572283/146‑1 (MQ=37)                                                   ccAGCGTCGCATCAGGCGCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGAGGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCaa                                                                                                <  1:637101/149‑1 (MQ=255)                                                        gTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGa                                                                                           <  1:697972/149‑1 (MQ=255)                                                                    tCCGGGTGCAGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGAGAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACACTCATGGc                                                                               <  1:71117/149‑1 (MQ=255)                                                                          tGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATac                                                                         <  1:444470/149‑1 (MQ=255)                                                                             cGGATGCAGCGTGACCGCCTTATCCGGCCTACGGCTAGGATTTGTAAGCCAGATAAGAAGCGCCATCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACACCCAACAGGACACACCCATGGCatatcacaa                                                                      >  2:706738/1‑144 (MQ=37)                                                                                     gCGTGAACGCCTTATCCGGCCGACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATACCACCTTTTcac                                                              <  1:243238/149‑1 (MQ=255)                                                                                         gAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATACCACCTTTTCACAGAc                                                          <  1:178812/149‑1 (MQ=255)                                                                                             gCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGGGTAAAGTGGAGTTTCAGGCATTAAACTCCCAACAGGACACACCCATGGCATATCACACCTTTTAAGAGACGaaa                                                      >  1:170395/1‑149 (MQ=21)                                                                                             gCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGAATAACGCACAGGAGGCGGCGTTACAGGCCGTATCCGGCATTAAACTCCTAACAGGACACACTCATGGCATATACCACCTTTTCACAGTCGaaa                                                      >  1:540165/1‑149 (MQ=37)                                                                                                gtATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTACCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATACCACCTTTTCACAGACGAAAAAt                                                   <  2:572789/148‑1 (MQ=255)                                                                                                   tCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATACCACCTTTTCACAGACGAAAAATGAt                                                <  1:367890/149‑1 (MQ=255)                                                                                                    ccGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCGTATCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATACCACCTTTTCACAGACGAAAAATGATc                                               <  2:511521/149‑1 (MQ=255)                                                                                                       gCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACAATCTGTGCATATACCACCTTTTCACAGACGAAAAATGATCAGc                                            <  1:175013/149‑1 (MQ=255)                                                                                                        ccTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATACCACCTTTTCACAGACGAAAAATGATCAGCt                                           <  2:268559/149‑1 (MQ=255)                                                                                                          tACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATACCACCTTTTCAAAGACGAAAAATGATCAGCTCa                                         >  1:167494/1‑149 (MQ=255)                                                                                                               cTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATAGCACCTTTTCACAGACGAAAAATGATCATCTCAAAGaa                                    >  1:115667/1‑149 (MQ=255)                                                                                                                       tGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATACCACCTTTTCACAGACGAAAAATGATCAGCTCAAAGAACCGATGtt                            <  1:733715/149‑1 (MQ=255)                                                                                                                          aGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACCCACTCATGGCATATACCACCTTTTCACAGACGAAAACTGATCAGCTCAAAGAACCGATGTTCtt                         >  1:336108/1‑149 (MQ=255)                                                                                                                          aGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATACCACCTTTTCACAGACGAAAAATGATCAGCTCAAAGAACCGATGTTCtt                         <  1:160397/149‑1 (MQ=255)                                                                                                                          aGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATACCACCTTTTCACAGACGAAAAATGATCAGCTCAAAGAACCGATGTTCtt                         <  1:160193/149‑1 (MQ=255)                                                                                                                          aGGCCTGATAAGACGCGCCAGCGTCGCAGCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATACCACCTTTTCACAGACGAAAAATGATCAGCTCAAAGAACCGATGTTCtt                         <  1:160182/149‑1 (MQ=255)                                                                                                                            gCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATACCACCTTTTCACAGACGAAAAATGATCAGCTCAAAGAACCGATGTTCTTTg                       <  1:162641/149‑1 (MQ=255)                                                                                                                             gcttacaaGACGCGCCTGCGTGTCATCAGGGACCGGATGCGGCGTAAAATGCCTTAGCCTGCATTAAACTCCCAACAGGACACACTCAGGGCATATACCACCTTTTCACAGACGAAAAATGATCAGCTCAAAGAACCGATGTTCTTTgg                      <  2:38388/143‑1 (MQ=255)                                                                                                                             ccTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGAAAAATTCCTTATCAGGCATTAAACTCCCAACAGGACACACTCATGGCATATACCACCTTTTCACAGACGAAAACTGATCAGCTCAAAGAACCGATGTTCTTTgg                      >  1:356178/1‑149 (MQ=255)                                                                                                                              cTGATAAGACGCGCCAGCGTCGCATCGGGCACAGGATGAGGCGTAAAATGCTTTATGGGGGATGAAGCTGCCGACAGGACACACTCATGGCATATACCAGCTTTTCACAGACGGAGAATGATCAGCTCAAAGAACAGATGTTCTTTGGt                     >  2:493159/1‑149 (MQ=255)                                                                                                                                gATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATACCACCTTTTCACAGACGAAAAATGATCAGCTCAAAGAACCGATGTTCTTTGGTCa                   >  1:660089/1‑149 (MQ=255)                                                                                                                                gATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAAAGCCTTAGCTGTCATTAAGCGCCCAACAGGACACACTCATGGCATATACCACCTTTTCACAGACGAAAAATGATCAGCTCAAAGAACCGATGTTCTTTGGTCa                   >  2:670586/1‑149 (MQ=255)                                                                                                                                  tAAGACGAGCCAGCGTGTCATCTGGGACATGAGGCGGCGGAAAATGCCTTATCCGGCATTAAACTCCCAACAGAACACACTTCTGGCTTTTTCTACTTTAAAAAAAAAAAAAAATGATCAGCTCAAAGAACCGATGTTCTTTGGTCAGc                 <  2:340017/149‑1 (MQ=255)                                                                                                                                     gACGCGCCAGCGTCGCATCAGGCATAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATACCACCTTTTCACAGACGAAAAATGATCAGCTCAAAGAACCGATGTTCTTTGGTCAGCCgg              <  1:94897/149‑1 (MQ=255)                                                                                                                                                 tCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATACCACCTTTTCACAGACGAAAAATGATCAGCTCAAAGAACCGATGTTCTTTGGTCAGCCAGTCAACGTGGCTc  >  1:524827/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGACACACTCATGGCATATACCACCTTTTCACAGACGAAAAATGATCAGCTCAAAGAACCGATGTTCTTTGGTCAGCCGGTCAACGTGGCTC  >  NC_000913_3_bme_pgi/2347173‑2347465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.