New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	2304722 =	17 (0.410)	8 (0.200)	6/276	4.8	19.2%	noncoding (306/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913_3_bme_pgi	4027525 =	51 (1.290)					noncoding (204/281 nt)	REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCA  >  NC_000913_3_bme_pgi/4027378‑4027672                                                                                                                                                    |                                                                                                                                                    cGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGCACCGTAGGCCGGATAAGGCGGTTACGCCGCATCCGGCCATTGGTGCATGATGCCTGATGc                                                                                                                                                    >  2:463730/1‑149 (MQ=255)          cGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGgc                                                                                                                                           >  1:727819/1‑149 (MQ=255)            tttACGCCGAATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCAGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGACTGATGCGACGCTGgcgc                                                                                                                                         <  2:649608/149‑1 (MQ=255)                  ccgcATCCGGCAATTGGTAAATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTa                                                                                                                                   <  2:615787/149‑1 (MQ=255)                   cgcATCCGGCAATTCGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTCTCGTGCCCACCATTAATCCGAACCGTAGGCCGGATAATGCGGTTACGCCGCATCCCGCAATCGGTGAATGATGCCTGATGCGACGCTGGCGCGTCGTac                                                                                                                                  >  2:598552/1‑148 (MQ=17)                          ggCAATTGTTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGACTCCGTCTATTGGGGCGTTTTGGCTGATGCGACGCTGGCGCGTCTTATCAGGCCt                                                                                                                           >  2:335903/1‑149 (MQ=17)                          ggCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCt                                                                                                                           >  2:34505/1‑149 (MQ=255)                          ggCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCt                                                                                                                           >  1:307675/1‑149 (MQ=255)                             aaTTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACa                                                                                                                        <  1:90224/149‑1 (MQ=255)                                  gTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGt                                                                                                                   >  2:163689/1‑149 (MQ=255)                                       tgatgCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCgg                                                                                                              >  1:311295/1‑149 (MQ=255)                                              tGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATATGGCGTTTACGCCGCATCCGGCAATTGGTGCATCAGGCCTGATGCGACGCCGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTa                                                                                                       >  2:553132/1‑149 (MQ=255)                                              tGATGCGACGCTGTCGCGTCTTATAGTGCCTACAAATAGTCCGAACCGACGGCCGGATAAGGCGTTAACGCAACATACGCCACAAGGTAAAGGATCACTGCTGCGACGCTGGCGAATATAATCACGCCTGCGTTAGTGCCGGacagata                                                                                                       >  2:629968/1‑143 (MQ=2)                                                   cGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCg                                                                                                  <  1:674889/149‑1 (MQ=255)                                                    gACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAAACCgg                                                                                                 >  1:608306/1‑149 (MQ=255)                                                     aCGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGa                                                                                                <  2:223031/149‑1 (MQ=255)                                                      ggCTGTCGCGTCTGATCGTGCATACAAATAGTCGGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGAt                                                                                               <  1:404415/148‑1 (MQ=255)                                                          gTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAgg                                                                                           <  2:401223/149‑1 (MQ=255)                                                           tCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGc                                                                                          >  1:601804/1‑149 (MQ=255)                                                           tCGCGGCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGc                                                                                          <  1:163689/149‑1 (MQ=255)                                                             gcgTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGt                                                                                        >  2:334991/1‑149 (MQ=255)                                                                tCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGAGACGCTGGCGCGTCTTATCAGGCATACATTGGTGCCGGATCGGTTGCCCGGATAAGGCGTTCa                                                                                     >  2:533463/1‑149 (MQ=255)                                                                tCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCAGCTAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGCTCGGTAGACCGGATAAGCCGTTCa                                                                                     >  2:104233/1‑149 (MQ=255)                                                                      cGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCAcgccgc                                                                               <  1:687143/149‑1 (MQ=255)                                                                         gCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCACGCCTACCTTGGTGACGGATCGGTAGACCGGATAAGGCTTTCACGCCGCacc                                                                            >  2:273424/1‑147 (MQ=255)                                                                          ccTACAAATAGTCCGAACCGTAGGCCGGATGAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCATGATGCGACGCTGGGGCGTCTTGTCAGGCCTAAATTGGTGCCGGATCGGTAGCCCGGATAAGGGGTTTACTCTGCCTcc                                                                           >  2:583151/1‑149 (MQ=17)                                                                              cAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                       >  1:9469/1‑149 (MQ=255)                                                                               aaaTAGTCCGAACCGTAGGCCGGATAAGGCGATTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTCTCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCaa                                                                      >  1:25941/1‑149 (MQ=255)                                                                                   aGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTgg                                                                  <  1:334991/149‑1 (MQ=255)                                                                                     tCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGtt                                                                >  1:417880/1‑149 (MQ=255)                                                                                     tCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGCAGACCGGATAAGGCGTTCACCCCGCATCCGGCAAGTGGtt                                                                >  2:559860/1‑149 (MQ=255)                                                                                       cGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTaa                                                              >  1:249795/1‑149 (MQ=255)                                                                                       cGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGCTCACGCCGCATCCGGCAAGTGGTTaa                                                              >  2:598696/1‑149 (MQ=255)                                                                                                 gCCGGATAAGGCATTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCGGCATCCGCCAAGTGGTTAAACCCGCTcca                                                    >  1:628811/1‑147 (MQ=255)                                                                                                  ccGGATAAGGCGTTTACCCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCaaa                                                   <  1:445821/149‑1 (MQ=255)                                                                                                   cGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAac                                                  >  1:153626/1‑149 (MQ=255)                                                                                                             gTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCaaa                                                   >  2:495943/1‑138 (MQ=255)                                                                                                             gTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCaaa                                                   <  1:495943/138‑1 (MQ=255)                                                                                                               ttACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATa                                      <  1:704367/149‑1 (MQ=255)                                                                                                                  cgccgcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGATCAAACCCCGTCGCAATAccc                                   >  2:563371/1‑149 (MQ=255)                                                                                                                  aggcgcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATAccc                                   <  2:623329/146‑1 (MQ=255)                                                                                                                     cgcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGa                                >  1:730478/1‑149 (MQ=255)                                                                                                                       cATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGAcc                              <  1:154911/149‑1 (MQ=255)                                                                                                                            ggCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGCTCGGTAGACCGGATAAGGCATTCACGCCGCATCCGGCAAGTGGTTACACACGCTCAACCACCGTCGCGATACCCTGACCCAGaa                         >  2:65136/1‑148 (MQ=37)                                                                                                                            ggCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGAc                         >  2:20238/1‑149 (MQ=255)                                                                                                                                cttGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACGGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAGCCCGCTCAAACACAGACGCATTACCATGACCCAGACCGAt                     >  1:330541/2‑149 (MQ=37)                                                                                                                                 ttGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATa                    <  1:20238/149‑1 (MQ=255)                                                                                                                                   ggTGCATGATGCCTGATGCGACGCTGGGGCCTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAGCCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATaca                  <  2:683262/149‑1 (MQ=255)                                                                                                                                      gCATGATGCCTGGTGGGACGCGGGCGTGTCTTAGCAGGCCTACATTGGGGCCGGATCGGTAGACCGGATAAGGCGTTCAAGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACAt               <  1:562196/149‑1 (MQ=255)                                                                                                                                       cATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGGAAGTGGTTAAACCCGCGCAAACCCCGTCGAAATACGCTGAACCAGACCGGTacaattc              >  1:151989/1‑145 (MQ=37)                                                                                                                                            tgCCTGAGGCGAGGCTGGCGCGTCTGATCAGGCCTACATTGGTGCCGGATCGGTCGACCGGATAAGGCGGTCACGCCGCATCCGGCAAGTGGTTAAACCCGCGAAAAGACAGTCGCAATCCCCGGAGCAGGGCGCATACACAtcgtcgg         >  2:131246/1‑148 (MQ=255)                                                                                                                                              ccTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCa       <  2:565844/149‑1 (MQ=255)                                                                                                                                              ccTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTACCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCa       <  1:463730/149‑1 (MQ=255)                                                                                                                                                tGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACAACGTCGCCAGa     >  2:246372/1‑149 (MQ=255)                                                                                                                                                   tGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGGCGCAATACCCTGACCCAGACCGATACACATCGTCGCCGGACCa  >  1:335813/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCA  >  NC_000913_3_bme_pgi/4027378‑4027672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.