New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	2304729 =	17 (0.430)	8 (0.200)	6/276	4.8	32.0%	noncoding (313/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913_3_bme_pgi	= 2431012	NA (NA)					noncoding (84/84 nt)	REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

GCGCTGAAAAAATATTCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAATTTTACCCTGCACTGGCGTGGA  >  NC_000913_3_bme_pgi/2430868‑2431159                                                                                                                                                 |                                                                                                                                                    gcgcTGAAAAAATATTCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTAACCCGGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGa                                                                                                                                                 >  1:240141/1‑149 (MQ=255)          aaaTATTCAACGCCATCGACTTTTTGTGCCTTTGCGGCATCGGGCAATGCCTGTCGGATGCGGCGTAAACGCCGTATCCGACCTACGGTTCGTCCCCTCCGTCGGCCTGATCAGACGCCGCAGCGTCACACCAGGCACGACCGTAttga                                                                                                                                        >  2:131088/1‑147 (MQ=25)          aaaTATTCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTAttca                                                                                                                                        >  2:71072/1‑147 (MQ=255)                  aaCGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGCCGCGCCGGCGTCGCATCCGGCAAGACCGTATTAATTCGGCGt                                                                                                                                >  1:289727/1‑149 (MQ=255)                  aaCGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGCCGGATGCGGCGTACACGCCTTCTCCGACCTAAGGTTCTACCCATGCTCAGGGCTGATCAGAAGCGCCCGCGGCGCATCCGGCAAGAACGTATTCAtcctccgt                                                                                                                                >  2:245010/1‑142 (MQ=255)                    cGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCCGGCAAAACCGTATTAATTCGGCGtat                                                                                                                              >  2:709016/1‑149 (MQ=255)                     gCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTCCGGTTCTACCCATGCGTAGGCATGATAAGACGCGCCAACGTCGCACAAGGCCAGACCGTATTAGTTCGGAGtata                                                                                                                             >  2:624826/1‑149 (MQ=37)                       cATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGc                                                                                                                           <  1:687867/149‑1 (MQ=255)                           gACTTTTTATGCCTTTGCGGCATCGTGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCAt                                                                                                                       <  2:142086/149‑1 (MQ=255)                              tttttATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTAc                                                                                                                    >  1:554107/1‑149 (MQ=255)                                 ttATGCCTTTGCGGCATCGGGCAATGCGTGCCGGATTCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCAc                                                                                                                 <  1:383483/149‑1 (MQ=255)                                  tATGCCTTTCCGGCATCGGGCAATGGGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGGAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACg                                                                                                                <  2:479863/149‑1 (MQ=255)                                          tGCGGGATCGGGCAAGGGGGGTGGGATGCGGCGTAAACGCCTTATGCGACCTACGGGGCTCACCCTGCGGAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCAGTACCACGCCACTTaa                                                                                                        <  2:81438/149‑1 (MQ=37)                                          tGCGGCATCGGGCAATGCGGGTCGGATGCGGCGGAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAATACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTaa                                                                                                        <  2:94492/149‑1 (MQ=255)                                            cGGCATCGGGAAATGGGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGc                                                                                                      <  1:277456/149‑1 (MQ=255)                                                 tCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTAATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCAGCGTATAGCCCAGTACCACGCCACGTAAGCCCGac                                                                                                 >  1:304612/1‑148 (MQ=38)                                                 tCGGGAAAGGCCGGTGGGATGCTGCGTAATCGCCTTATCCCTCCTACGGTTCTACCCCTGCGTATGCCTGATAAGACGCGCCGTCGTCGCAACAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGaa                                                                                                 <  2:168163/149‑1 (MQ=255)                                                    ggCAATGCCTGTCGGATGCGGCGGAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGt                                                                                              <  2:726833/149‑1 (MQ=255)                                                         tGCGTGTCGGATGCGGCTTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCtt                                                                                         <  1:712361/149‑1 (MQ=255)                                                                         cgTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGaa                                                                         <  2:554107/149‑1 (MQ=255)                                                                          gTAAACGCCTTATCCGACCTACGGTTGTCCCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAAc                                                                        <  1:659648/149‑1 (MQ=255)                                                                          gTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAAc                                                                        <  1:215541/149‑1 (MQ=255)                                                                           tAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAAcc                                                                       <  1:546081/149‑1 (MQ=255)                                                                             aaCGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCtt                                                                     >  2:137578/1‑149 (MQ=255)                                                                             aaCGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGAGCAATCGTCGCAGCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCtt                                                                     >  1:575784/1‑149 (MQ=255)                                                                                gCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGCCGCGCCCGCGGCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCa                                                                  <  1:138551/149‑1 (MQ=255)                                                                                 ccTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAg                                                                 >  2:728623/1‑149 (MQ=255)                                                                                  cTTATGCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCGGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACAACGCGACTTAAGCCAGAAAGTTGCTTTAACTCAGCCGGCGAACCTTTGAGc                                                                >  2:147157/1‑149 (MQ=38)                                                                                  cTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCCGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGGATTGCCTATTACCACGCCACGTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCGGc                                                                >  1:538189/1‑149 (MQ=39)                                                                                  cTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGc                                                                <  2:703470/149‑1 (MQ=255)                                                                                   ttATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAATTGCTTCAACTCCCCCAGCGAACCTTTCAGCt                                                               >  1:500593/1‑149 (MQ=255)                                                                                         gACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTCCCACGCCACTTAAGCCCGACACTTGCTTCAACGCACCCAGCGAACCTTTCAGCTTATCtt                                                         >  1:602278/1‑149 (MQ=39)                                                                                            cTACGATTCTACCCCTGCGTAGGCGTGAGAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCCCGCACCTTAAGCCAGGAAGTTCCTTCAACTCACCCATCGAACCTTTCAGCCTCGCTTTCg                                                      >  2:569591/1‑149 (MQ=255)                                                                                             tACGGTCCTACCGCTTCGTAGGCGTGGTAAGACGCGACACCGTTGCAACAATCAAGACCGGATTAATTCGGCGTATAGCCCATAACCACGCCACTTAAGCCAGAAAGTTGCTTCACCTCACCCAGCGAACCTTTCAGCTTAGCTTTCGa                                                     <  2:3976/149‑1 (MQ=255)                                                                                              aCGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTTTTTTGATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAg                                                    >  1:139112/1‑149 (MQ=39)                                                                                                ggTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCCCCCAGCGAACCTTTCAGCTTATCTTTCGAGGc                                                  >  1:296221/1‑149 (MQ=255)                                                                                                ggTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGGATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTGCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAgcc                                                  >  1:331030/1‑147 (MQ=255)                                                                                                  ttCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGGGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCAt                                                >  1:63446/1‑149 (MQ=255)                                                                                                      aCCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATCAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTCTCTTTCGAGGCATCCgg                                            >  2:729497/1‑149 (MQ=255)                                                                                                       ccccTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGc                                           <  1:20229/149‑1 (MQ=255)                                                                                                       ccccTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGc                                           >  1:628049/1‑149 (MQ=255)                                                                                                       ccccTGCGTAGGCCTGAGAAGGCGCGGCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGc                                           <  2:147937/149‑1 (MQ=255)                                                                                                        cccTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACCCCACTTAATCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCCGCTTATCTTTCGAGACATCCGGcc                                          >  2:34733/1‑149 (MQ=255)                                                                                                                  gCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAAt                                >  1:562997/1‑149 (MQ=255)                                                                                                                  gCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGCCATCCGGCCCAACCAGAAt                                >  2:226030/1‑149 (MQ=255)                                                                                                                    cTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATAc                              >  1:88791/1‑149 (MQ=255)                                                                                                                                gcCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCAGTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAATTTTAc                  <  2:415422/149‑1 (MQ=255)                                                                                                                                      gtggcagcaGGCAAGACCGTATTAATTGGGCGTATAGCTCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGACCAACCAGAATACGGGTAATTTTACCCTGCa            <  2:167569/146‑1 (MQ=255)                                                                                                                                              aGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAATTTTAACCTGCACTGGCgag    >  1:498573/1‑147 (MQ=255)                                                                                                                                                gCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAATTTTACCCTGCACTGGCGTGGa  <  1:137578/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GCGCTGAAAAAATATTCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAATTTTACCCTGCACTGGCGTGGA  >  NC_000913_3_bme_pgi/2430868‑2431159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.