Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_bme_pgi 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_bme_pgi 1978503–1979269 1979278 10–776 38 [0] [0] 38 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_bme_pgi = 19785020 (0.000)37 (0.940) 33/274 0.2 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913_3_bme_pgi 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

ATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAA  >  NC_000913_3_bme_pgi/1978359‑1978648
                                                                                                                                               |                                                                                                                                                  
aTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACGCAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                               >  2:383266‑M1/1‑144 (MQ=255)
 tGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACCCAAATAAACTCGTCACTACACGCACATACAACGAAGCGGCGCTACGATTTTCAATAATACGTGATTCAGATCACACAAAACACTCAATTCCTTTCCATAAATGtataaa                                                                                                                                              >  2:42322‑M1/1‑143 (MQ=255)
      cTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcata                                                                                                                                         >  1:588186‑M1/1‑138 (MQ=255)
            acTTATCTAGGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACCGAGGGGGGCTGCGATTTTCAATAATGCGTCATGCAGAGAACACAAAGAAGTCCATTACTTAACATAAATGtataacacgtccttttg                                                                                                                                   >  2:2799‑M1/1‑132 (MQ=255)
                aTCAAAGAGTGTTCCGAAATCGACGCAACTGTACTCATCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACTCTCAATTTCTTAACAGAAATGtataagtcatacttttgtttt                                                                                                                               <  2:123775‑M1/149‑22 (MQ=255)
                  cTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                             <  1:58037‑M1/149‑24 (MQ=255)
                                   tCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttttggtgtatttaaacttttt                                                                                                            >  2:384305‑M1/1‑109 (MQ=255)
                                            cTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                                   >  2:290491‑M1/1‑100 (MQ=255)
                                            cTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                                   >  2:659145‑M1/1‑100 (MQ=255)
                                             tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                                                                  >  1:591693‑M1/1‑99 (MQ=255)
                                                   cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcta                                                                                            <  1:226742‑M1/149‑57 (MQ=255)
                                                    gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcattctgttaaaaagtttttcgctac                                                                                           >  1:400868‑M1/1‑92 (MQ=255)
                                                          acacGCAGATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                                                                     <  2:668676‑M1/149‑64 (MQ=255)
                                                             cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacatttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag                                                                                  <  1:481427‑M1/149‑67 (MQ=255)
                                                                       aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagccaaaatgaa                                                                        >  1:649588‑M1/1‑73 (MQ=255)
                                                                       aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaa                                                                        >  2:392474‑M1/1‑73 (MQ=255)
                                                                                  cgtcgatTTTTAATAATGCGGGAGGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtttatttcaatctgttaaaaagtttttcgctacgcgagcaagcaaaaatgaaacaggaataat                                                             <  2:47989‑M1/146‑88 (MQ=255)
                                                                                  cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataat                                                             >  1:519986‑M1/1‑62 (MQ=255)
                                                                                  cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataat                                                             <  2:69505‑M1/149‑88 (MQ=255)
                                                                                  cTGCGATTTTCAACAATGCGTGATGCAGAACACACAAAACACTCAATTACGTAACATAAATGtataagtcatacttttgttttgggtgtatgtcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataag                                                             <  1:679398‑M1/149‑88 (MQ=255)
                                                                                   tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttttttttgttttatttcaatctgttaaaaagtttttcgttacgctagtaagcaaacgtgaaacaggagtaata                                                            >  2:93740‑M1/1‑61 (MQ=255)
                                                                                      gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                                     >  2:279785‑M1/1‑58 (MQ=255)
                                                                                      gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                                     <  1:279785‑M1/89‑32 (MQ=255)
                                                                                       aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcatacaaaaatgaaacaggaataatctcaa                                                        >  2:85510‑M1/1‑57 (MQ=255)
                                                                                        ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtgttgggtgtatttcaatctgttaaaaagtttttggctacgctagcaagcaaaaatgaaacaggaataatcgaaat                                                       >  2:384979‑M1/1‑56 (MQ=255)
                                                                                           tCAATAAGTCGTGATGAAGATCATACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggg                                                    <  1:383266‑M1/149‑97 (MQ=255)
                                                                                              ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg                                                 >  2:241925‑M1/1‑50 (MQ=255)
                                                                                              ataatGACTGATCCAGAACAAACAAAACCCTCAATTACTTAACACAAAGGtataagtcctacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctccgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg                                                 <  1:42322‑M1/149‑100 (MQ=255)
                                                                                                   gCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcg                                            <  1:275472‑M1/149‑105 (MQ=255)
                                                                                                             gATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                                  <  1:91890‑M1/149‑115 (MQ=255)
                                                                                                              aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                                 >  1:712875‑M1/1‑34 (MQ=255)
                                                                                                              aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                                 <  2:712875‑M1/149‑116 (MQ=255)
                                                                                                                 acaaaAACCACGCAATTCCTTACCATAAATGtataagtcatacttttgtttggggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                              <  2:505603‑M1/149‑119 (MQ=255)
                                                                                                                   acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact                            >  1:703599‑M1/1‑29 (MQ=255)
                                                                                                                    caAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactc                           >  1:471023‑M1/1‑28 (MQ=255)
                                                                                                                            tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaa                   >  1:307585‑M1/1‑20 (MQ=255)
                                                                                                                                 tACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatc              <  2:588186‑M1/149‑135 (MQ=255)
                                                                                                                                             aTGtataaggtagacttttgttttgcgtgtagttcaatcggttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaatactcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaa  <  2:620897‑M1/149‑147 (MQ=255)
                                                                                                                                               |                                                                                                                                                  
ATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAA  >  NC_000913_3_bme_pgi/1978359‑1978648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: