New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 3390511	49 (1.240)	6 (0.160)	5/276	4.9	11.4%	intergenic (+62/+72)	aaeR/tldD	transcriptional regulator for aaeXAB operon/putative peptidase
	?	NC_000913_3_bme_pgi	= 3390524	46 (1.200)					intergenic (+75/+59)	aaeR/tldD	transcriptional regulator for aaeXAB operon/putative peptidase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGCTGGCCCACGCCAACCGGCAAACTTTGCCCTTCTTT  >  NC_000913_3_bme_pgi/3390379‑3390663                                                                                                                                                  |                                                                                                                                            cGCTGCGGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAg                                                                                                                                          <  2:308519/149‑1 (MQ=255)   cTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAggg                                                                                                                                        <  2:364809/149‑1 (MQ=255)      aCGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTAACCCTAACCCTCACCCCAAAGGGCCGAGGGGAc                                                                                                                                     >  2:160021/1‑149 (MQ=255)       cGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCGCCCCTTTGGGGTGAgggttag                                                                                                                                    <  1:346959/149‑5 (MQ=255)         gATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGt                                                                                                                                  >  1:150497/1‑149 (MQ=255)              ttttGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTg                                                                                                                             >  1:621887/1‑149 (MQ=255)              ttttGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTg                                                                                                                             >  1:409012/1‑149 (MQ=255)                 tgttgAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCAc                                                                                                                          <  2:164151/149‑1 (MQ=255)                    tgATGTCGGCAAGTTGTTTCAGGAGATGCACGGGCGTGGGAAAAAGAAGGAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTCCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTa                                                                                                                       <  1:317793/149‑1 (MQ=38)                        gTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGaaa                                                                                                                   >  2:494730/1‑149 (MQ=255)                          cGGTAAAGTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGa                                                                                                                 <  2:587785/149‑1 (MQ=255)                             tAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGatta                                                                                                              >  1:227474/1‑149 (MQ=255)                              aaaTTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGattaa                                                                                                             <  1:615943/149‑1 (MQ=255)                                 ttGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGCCCGTTCGTGCACGTAGAAAGattaatta                                                                                                          >  2:460034/1‑149 (MQ=255)                                 ttGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACAGGTTCCCCGCAGCCTAACCCTCACCCCAAAGGGGCAAGGGGACCGTTCGTGCACGTAGAAAGattaatta                                                                                                          >  2:124398/1‑149 (MQ=255)                                   gTTTCAGGAGATCCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTTTACAAACCTGTGCCAACGGGTTCCCCTCACCCTCACCCTAACCACATAAGCCCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATc                                                                                                        <  2:213838/149‑1 (MQ=255)                                      tCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCtt                                                                                                     <  1:300856/149‑1 (MQ=255)                                       cAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTGGTGCACGTAGAAAGATTAATTATCCTTc                                                                                                    >  1:54103/1‑149 (MQ=255)                                        aGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCt                                                                                                   <  2:285276/149‑1 (MQ=255)                                                    ggCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGaa                                                                                       <  2:227474/149‑1 (MQ=255)                                                         gggAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAattat                                                                                  >  2:331546/1‑149 (MQ=255)                                                                agaAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGaaa                                                                                                                   >  2:621678/1‑109 (MQ=255)                                                                agaAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGaaa                                                                                                                   <  1:621678/109‑1 (MQ=255)                                                                 gaAGTAATACATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATGCTTTTGAGAATAGTGAAATTATTTCGAAGt                                                                          >  1:181768/1‑149 (MQ=38)                                                                       atgcATATTGTACTGTTACGGTGTACAAACCTGCGCCAACGGGTCCCCCGCACCCTAACCCTCACCCCAAAGGGGCGAGGGAACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGcc                                                                    <  1:12268/146‑1 (MQ=255)                                                                         tCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGGTCCCCTCGCCCTAACCCGCACCCGAGAAGGGCGAGGGGACCGTTCGTGCAAGTAAAAAGATTTATTATCCTTATCAACATAGTGAAATTATTACACAGTaatcccca                                                                  >  2:282830/1‑142 (MQ=255)                                                                         tCATATTGTACTGTTACGATGTACAAACCTGTGACAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCAAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAGAATAGTTAAATTATTACGCAGTACCGCCaa                                                                  >  2:340609/1‑149 (MQ=39)                                                                         tCACATTGTACGGTTACGTTGTCCAAACCTGTGCCAACGGGTTCCCCCCACCCTAACCCTCACCCCAAAGGGGCGAGGGGTGCATTCGTGCACGGAGAAAGATTAATTATCCTTCTGAAAATAGTTAAATTATTACGCAGTACCGCCaa                                                                  <  1:307469/149‑1 (MQ=255)                                                                           atatTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACa                                                                <  2:621887/149‑1 (MQ=255)                                                                                gTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAg                                                           <  1:376308/149‑1 (MQ=255)                                                                                      ttACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATc                                                     <  1:331546/149‑1 (MQ=255)                                                                                        aCGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGa                                                   <  2:409012/149‑1 (MQ=255)                                                                                              tACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCCGTACCGCCAACAGTCAGGTTATCGACTTTCa                                             >  2:57940/1‑149 (MQ=255)                                                                                              tACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACt                                                 >  2:45737/1‑145 (MQ=255)                                                                                              tACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACt                                                 <  1:45737/145‑1 (MQ=255)                                                                                              tACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCa                                             >  2:68402/1‑149 (MQ=255)                                                                                                        tgCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGAGGCGAGGGGACCGTTCGTGCCCGTAGAAAGATTAATTATCCTGCTGAAAATAGCGAAATGAGGACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTcggctg                                   >  2:145877/1‑149 (MQ=255)                                                                                                        tgCCAACGGGTCCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTACCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTtggctg                                   <  1:221172/149‑1 (MQ=255)                                                                                                             aCGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGTACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGCTGGCCCa                              <  1:595455/149‑1 (MQ=255)                                                                                                                          aCCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAGTAGTGAAATTATTGCGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGCTGGCCCACGCCAACCGGCaa                 >  1:613880/1‑149 (MQ=255)                                                                                                                            ccTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGCTGGCCCACGCCAACCGGCAAAc               >  1:402536/1‑149 (MQ=255)                                                                                                                             cTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCACCAACAGTCAGGTTATCGACTTTCAACGTTGGCTGGCCCACGCCAACCGGCAAACt              >  1:253617/1‑149 (MQ=255)                                                                                                                              tAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAAGTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAAAAGTCAGGTTATCGACTTTCAACGCTGGATGCCCCACGCCAACCGCCAAACtt             >  2:326532/1‑149 (MQ=255)                                                                                                                                  ccTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGCTGGCCCACGCCAACCGGCAAACTTTGcc         >  1:347974/1‑149 (MQ=255)                                                                                                                                  ccTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGCTGCCCCACGCCAACCGGCAAACTTTGcc         >  1:600929/1‑149 (MQ=255)                                                                                                                                        cccAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGTCTGGCCCACGCCAACCGGCAAACGTTGCCcttctt   >  2:646510/1‑149 (MQ=255)                                                                                                                                        cccAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGCTGGCCCACGCCAACCGCCAACCTTTGCCctactt   >  2:519223/1‑149 (MQ=255)                                                                                                                                                 gCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGCTGGCCCACGCCAACCGGCAAACTTTGCCCTTCttt  <  2:399388/141‑1 (MQ=255)                                                                                                                                                 gCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGCTGGCCCACGCCAACCGGCAAACTTTGCCCTTCttt  >  1:399388/1‑141 (MQ=255)                                                                                                                                                  |                                                                                                                                            CGCTGACGGATTATTTTGTTGAGGTCGGTAAATTGTTTCAGGAGATGCACGGGCGCGGGAAAGAGAAGTAATTCATATTGTACTGTTACGTTGTACAAACCTGTGCCAACGGGTTCCCCTCACCCTAACCCTCACCCCAAAGGGGCGAGGGGACCGTTCGTGCACGTAGAAAGATTAATTATCCTTCTGAAAATAGTGAAATTATTACGCAGTACCGCCAACAGTCAGGTTATCGACTTTCAACGTTGGCTGGCCCACGCCAACCGGCAAACTTTGCCCTTCTTT  >  NC_000913_3_bme_pgi/3390379‑3390663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.