New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_bme_pgi = 4168568110 (1.380)8 (0.110) 7/266 9.3 7.1% intergenic (+121/‑73) gltT/rrlB tRNA‑Glu/23S ribosomal RNA of rrnB operon
?NC_000913_3_bme_pgi = 4209974 NA (NA)intergenic (+125/‑69) gltV/rrlE tRNA‑Glu/23S ribosomal RNA of rrnE operon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 111 total aligned reads displayed.

CAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGC  >  NC_000913_3_bme_pgi/4168419‑4168716
                                                                                                                                                     |                                                                                                                                                     
cAGGGGTTCGAATCGCCTAGGGGACGTCATTTGCTGGTTTGTGAGTTAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGTATCATGCTGAAAATTGAAACACTGaacaac                                                                                                                                                       <  2:461622/150‑1 (MQ=11)
    ggTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACgaga                                                                                                                                                   <  1:418559/150‑1 (MQ=40)
     gTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGagag                                                                                                                                                  <  1:1108501/150‑1 (MQ=40)
     gTTCGAAACCCCTAGGGGACGCCAGTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGagag                                                                                                                                                  <  2:338345/150‑1 (MQ=255)
      ttCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAgt                                                                                                                                                 >  1:641617/1‑150 (MQ=255)
         gAATCCCCTAGGGGACGCCACTTGATGGTTTGTGAGTGAAAGTCGCCGACCTTAATATATCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATATGGATCAAGCTAAAAATTGAAACACTGAACAACGAGAgtttt                                                                                                                                              >  2:596616/1‑148 (MQ=255)
          aaTCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAgttgtt                                                                                                                                             >  2:411178/1‑150 (MQ=255)
          aaTCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATATTCGGGTGATGTTTGAGATATTTGCACTTTAAAAATCTGGATCAAGCTAAAAATTGAAACACTGAACAACGAGAgttgtt                                                                                                                                             >  2:551165/1‑150 (MQ=255)
            tCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCg                                                                                                                                           >  2:48863/1‑150 (MQ=255)
             ccccTAGGGGACGCCCCTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGt                                                                                                                                          <  1:556945/150‑1 (MQ=255)
               ccTAGGGGACGACACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGa                                                                                                                                        <  2:62226/150‑1 (MQ=255)
                      gACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATACTCGCTCTTTAAAAATCTGGATCAAGCTGAAAATTTAAACACTGAACAACGAGAGTTGTTCGTGAGtctctc                                                                                                                                 <  2:900312/150‑1 (MQ=255)
                        cGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCaa                                                                                                                               <  1:1255044/150‑1 (MQ=39)
                              ttGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGATAGGTGTTCGTGAGTCTCTCAAATTTTc                                                                                                                         >  1:655247/1‑150 (MQ=255)
                              ttGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAgtt                                                                                                                                                >  2:1127691/1‑127 (MQ=255)
                              ttGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAgtt                                                                                                                                                <  1:1127691/127‑1 (MQ=255)
                              ttGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTc                                                                                                                         <  1:1250115/150‑1 (MQ=40)
                              ttGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTc                                                                                                                         <  2:1301679/150‑1 (MQ=40)
                              ttGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTc                                                                                                                         <  1:719052/150‑1 (MQ=255)
                                    gTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAaca                                                                                                                   >  2:847466/1‑150 (MQ=255)
                                     tttGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGCGTTGAGCTTAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAacac                                                                                                                  >  1:1025795/1‑150 (MQ=14)
                                        gtgagtgaAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgat                                                                                                               <  1:55216/150‑1 (MQ=40)
                                        gtgagtgaAAGTCGCCGACCTTAATATCGTAAAACTCATCTTCGGGGGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACCTCGAGAGTTGTTCGTGAGCCTCTCAAATTTTCGCAacttgat                                                                                                               <  2:481001/150‑6 (MQ=14)
                                          gagtgaAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCCACCCgatga                                                                                                             >  1:1371098/1‑150 (MQ=255)
                                          gagtgaAAGGCGCCGTCCTTAATATTTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGGGTCTCTCAAATTTTCGCAACACgatga                                                                                                             <  2:1371098/150‑1 (MQ=255)
                                           ggggaAAGGTGCCGACGTTAATATCTCAAATCTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACTAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat                                                                                                            <  2:247028/147‑1 (MQ=11)
                                           agtgaAAGTCTCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat                                                                                                            <  1:369219/150‑1 (MQ=38)
                                           agtgaAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat                                                                                                            >  2:169814/1‑150 (MQ=255)
                                             tgaAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGAtgatga                                                                                                          >  1:1152974/1‑150 (MQ=255)
                                                       cGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaagaa                                                                                                <  1:383639/150‑1 (MQ=35)
                                                        gACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaagaaa                                                                                               >  1:790825/1‑150 (MQ=33)
                                                        caCCTTAATAGCTCAAAACTCATCTTAGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATAAAGCAGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCgaaagaaa                                                                                               <  1:385072/149‑1 (MQ=255)
                                                         aCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAAc                                                                                              <  1:343243/150‑1 (MQ=33)
                                                         aCCTGAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTGGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTAAGAGTCTCGAATTTTCGGAACACGTTGATGAATCGAAAGAAAc                                                                                              <  2:592270/150‑1 (MQ=11)
                                                          ccTTAATATCTCAAAACTCATCTTCGGGTGCAGTTTGAGATATTTGCTCTTTAAACATCTGGATCAAGCTGAAAAACGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAATGAAACa                                                                                             >  1:968070/1‑150 (MQ=11)
                                                          ccTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACa                                                                                             >  2:635463/1‑150 (MQ=32)
                                                           cTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTCGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCCCTCAAATTTTCGCAACACGAAGATGAATCGAAAGAAACAt                                                                                            >  1:1064274/1‑150 (MQ=12)
                                                               atatCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTc                                                                                        <  1:245478/150‑1 (MQ=32)
                                                                    tcAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCTAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGtt                                                                                   <  2:1061262/150‑1 (MQ=17)
                                                                    tcAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAgttgtt                                                                                                                                             >  1:963631/1‑92 (MQ=34)
                                                                    tcAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAgttgtt                                                                                                                                             <  2:963631/92‑1 (MQ=34)
                                                                    tcAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGaa                                                                                                         <  2:528481/128‑1 (MQ=33)
                                                                    tcAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGaa                                                                                                         >  1:528481/1‑128 (MQ=32)
                                                                    tcAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGAAAGAAACATCTTCGGGtt                                                                                   >  2:894471/1‑150 (MQ=17)
                                                                         aCTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCgg                                                                                      <  1:562216/142‑1 (MQ=32)
                                                                         aCTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTATCGCAAATTTTCGCAACACGATGCTGAATCGACAGAGAAATCTGAGGGTTGTGaa                                                                              >  1:644646/1‑149 (MQ=11)
                                                                          atCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAACCACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAgg                                                                             <  2:1266504/149‑1 (MQ=17)
                                                                           tCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAACTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGACCCATCTTCGGGATGTGAGGt                                                                            >  1:504385/1‑150 (MQ=255)
                                                                               tttCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAg                                                                        <  1:1003404/149‑1 (MQ=17)
                                                                                ttCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTATCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGc                                                                       <  2:478720/150‑1 (MQ=17)
                                                                                 tCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCg                                                                      >  2:1325195/1‑150 (MQ=32)
                                                                                       gATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAg                                                                >  1:888365/1‑150 (MQ=32)
                                                                                        aTGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAg                                                                        >  1:27202/1‑141 (MQ=32)
                                                                                        aTGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAg                                                                        <  2:27202/141‑1 (MQ=32)
                                                                                        aTGTTTGAGATATTTGCTCTTGAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGc                                                               <  2:1303188/150‑1 (MQ=17)
                                                                                         tGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGGCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCg                                                              >  1:194172/1‑150 (MQ=17)
                                                                                            ttGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTATGAGGTTAAACGACTAAGCgacc                                                           >  2:257336/1‑147 (MQ=12)
                                                                                              gagaTATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTacac                                                         <  1:1015711/150‑1 (MQ=32)
                                                                                                 atatTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACgct                                                      <  2:244744/150‑3 (MQ=17)
                                                                                                 atatTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGt                                                      <  2:276205/150‑1 (MQ=32)
                                                                                                  tatTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg                                                     >  1:1136183/1‑150 (MQ=32)
                                                                                                  tatTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg                                                     <  1:847466/150‑1 (MQ=32)
                                                                                                  tatTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACAAGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg                                                     <  1:970653/150‑1 (MQ=17)
                                                                                                   atTTGCCCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTgg                                                    <  1:107129/150‑1 (MQ=17)
                                                                                                    ttgtctctTTAAAAATTTGGATCAAGCCGAACATTGAAACACTGACCAACGAGAGTTGTTCGTGAGTCTCTCAAATGTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGa                                                   <  1:672552/146‑1 (MQ=11)
                                                                                                         tctTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGa                                                                                                                                        >  2:858955/1‑60 (MQ=38)
                                                                                                         tctTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGa                                                                                                                                        <  1:858955/60‑1 (MQ=38)
                                                                                                         tctTTAAAAAGCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACACCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGccc                                             <  1:88850/150‑1 (MQ=17)
                                                                                                           tttAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTGTCAACTTTTCGCAACATGATGATGAATCGAAAGAAACATGTTCGGGTTGTGAGGTTAAGCGACTATGCGTACACGGTGGTTGCCCTg                                           >  2:1272440/1‑150 (MQ=11)
                                                                                                           tttAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg                                                     <  1:926576/141‑1 (MQ=32)
                                                                                                           tttAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTg                                                     >  2:926576/1‑141 (MQ=32)
                                                                                                              aaaaaTCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTAGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTCGATGCCCTGGCa                                        >  2:1226243/1‑150 (MQ=17)
                                                                                                                      ggATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAgg                                <  1:144878/150‑1 (MQ=32)
                                                                                                                        aTCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCg                              >  1:1076036/1‑150 (MQ=32)
                                                                                                                         tCAAGCTGAAAATTGAAACGCTGAACAACGGGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGa                             <  2:67335/150‑1 (MQ=17)
                                                                                                                         tCAAGCTGAAAATTGAAACACTGAACAAGGAGAGTTGTTCGTGAGTCTATCAAATTTTCGCAGCATGATGATGAATCGCAACAGAAATATAGTGGTTGTGTGGTTAAGCGACTAAGCGTAAACGGTGGATGCCCTGGCAGTAAGAGGCGa                             >  1:325824/1‑150 (MQ=11)
                                                                                                                         tCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGa                             >  2:573540/1‑150 (MQ=32)
                                                                                                                            aGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGa                          <  1:154255/150‑1 (MQ=32)
                                                                                                                             gCTGAAAATTGAAACACTGAACAAGGAGAGTATTTCGTGAGTGTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCTTTGCAGTCAGAGGCGATGaa                         <  2:644646/150‑1 (MQ=11)
                                                                                                                              cTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTAGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGGTAAGTGACTAAGCGTACACGGTGGATGCGCTGGCAGTCAGGGGCGCTGAAg                        >  2:567530/1‑150 (MQ=11)
                                                                                                                               tGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGt                                                                            >  1:1314449/1‑98 (MQ=34)
                                                                                                                               tGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGt                                                                            <  2:1314449/98‑1 (MQ=34)
                                                                                                                                 aaaaTTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACACCGGCAGTACGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGAc                     <  1:1368499/150‑1 (MQ=11)
                                                                                                                                   aaTTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGt                   >  1:829998/1‑150 (MQ=32)
                                                                                                                                    aTTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTg                  <  1:48863/150‑1 (MQ=32)
                                                                                                                                    aTTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGAACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTg                  >  2:883148/1‑150 (MQ=17)
                                                                                                                                        aaaCACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCGGTCAGAgg                                >  1:1189950/1‑132 (MQ=18)
                                                                                                                                        aaaCACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCGGTCAGAgg                                <  2:1189950/132‑1 (MQ=18)
                                                                                                                                            acTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCga                                                                                                     <  1:1274523/60‑1 (MQ=35)
                                                                                                                                            acTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCga                                                                                                     >  2:1274523/1‑60 (MQ=38)
                                                                                                                                            acTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGCCAGTCAGAGGCGATGAAGGACGTGCTAATCTg          >  2:706456/1‑150 (MQ=17)
                                                                                                                                            acTGAACAACGAGAGTTGTTCGTGAGTCTCTAAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGATGGATGCCCTGGCAGTCAGAGGCGATGAAGAACGTGCTAATCTg          >  2:442119/1‑150 (MQ=12)
                                                                                                                                             cTGAACAACGAGAGTTGTGCGGGAGTCTCTCAAGTTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGCATGGCACTGGAGTGAGAGGCGATGAAGGACGTGCTAATCTGc         <  2:655247/150‑1 (MQ=11)
                                                                                                                                               gAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTCCGa       <  2:888365/150‑1 (MQ=17)
                                                                                                                                               gAACAACGAGAGGTGTTCGTGAGTCTCTCCAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGa       <  1:290215/150‑1 (MQ=17)
                                                                                                                                               aaacaacGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGa       <  1:483974/149‑1 (MQ=17)
                                                                                                                                                aacaacGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGATGTGCTAATCTGCGAt      >  2:1373028/1‑150 (MQ=17)
                                                                                                                                                  caacGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATaa    <  1:411178/150‑1 (MQ=32)
                                                                                                                                                   aacGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTGAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAg   >  1:815434/1‑150 (MQ=17)
                                                                                                                                                    acGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGc  >  2:176977/1‑150 (MQ=32)
                                                                                                                                                     |                                                                                                                                                     
CAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCGCCGACCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGC  >  NC_000913_3_bme_pgi/4168419‑4168716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.