New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	3171760 =	56 (0.930)	3 (0.050)	3/284	7.5	5.1%	coding (1277/1350 nt)	qseC	quorum sensing sensory histidine kinase in two‑component regulatory system with QseB
	?	NC_000913_3_bme_pgi	3171791 =	59 (1.030)					coding (1308/1350 nt)	qseC	quorum sensing sensory histidine kinase in two‑component regulatory system with QseB
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CATCGTGAGGGATAACGGCCCCGGTGTGACACCAGAGGCACTGGCGCGAATTGGCGAACGCTTCTATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAA  >  NC_000913_3_bme_pgi/3171632‑3171908                                                                                                                                 |                                                                                                                                                     cATCGTGAGGGATAACGGCCCCGGTGTGACACCAGAGGCACTGGCGCGAATTGGCGAACGCTTCTATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGt                                                                                                                                 <  1:397003/150‑1 (MQ=255)    ggttagcgATAACTGCCCCGGTGTGACACAAGAGGCAATGGCGCGAATTGGCGAACGCTGCAATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGAGTGTCCATCGAATCGCAAAATTGCATGGCATGAATGTTGa                                                                                                                              <  2:642334/143‑1 (MQ=255)      tgacgcaTAACGGCCCCGGTGTGTCACCAGAGTCACTGGCGCGTATTGGCGAACTCTTCTATAGCCCACCCGGACAAAGCGCTACCGGCAGCGGGCTTGGGCTATCGTTTGGCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAAt                                                                                                                            <  2:443612/144‑1 (MQ=255)              aaCGGCCCCGGTGTGACACCAGAGGCACTGGCGCGAATTGGCGAACGCTTCTATCGCCCACCCGGACAAACCGCTACCGGCAGAGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAAt                                                                                                                    >  2:491864/1‑150 (MQ=255)                cGGCCCCGGTGTGACACCAGAGGCACTGGCGCGAATTGGCGAACGCTTCTATCGCCCACCCGGACAAACCGCTACCGGCGGCGGGCTTGGGCTATCGATGGTCCCGCGAATCGCCAAATTGCATGGCATGAATGTTGAATGTGGGAAGGc                                                                                                                  >  1:807649/1‑150 (MQ=255)                 ggCCCCGGTGTGACACCAGAGGCACTGGCGCGAATTGGCGAACGCTTCTATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCg                                                                                                                 <  1:905864/150‑1 (MQ=255)                              cacCAGAGGCACTGGCGCGAATTGGCGAACGCTTCTATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGAt                                                                                                    >  2:751248/1‑150 (MQ=255)                                 cAGAGGCCCTGGCGCGAATTGGCGAACGCTTCTCTCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTCCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTg                                                                                                 <  2:410022/150‑1 (MQ=255)                                 cAGAGGCACTGGCGCGAATTGGCGAACGCTTCTATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTg                                                                                                 <  1:508185/150‑1 (MQ=255)                                 cAGAGGCACTGGCGCGAATTGGCGAACGCTTCTATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTg                                                                                                 <  2:107378/150‑1 (MQ=255)                                 cAGAGGCACTGGCGCGAATTGGCGAACGCTTCTATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTg                                                                                                 <  2:814254/150‑1 (MQ=255)                                 cAGAGGCACTGGCGCGAATTGGCGAACGCTTCTATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTg                                                                                                 <  1:453167/150‑1 (MQ=255)                                  agagGCACTGGCGCGAATTGGCGAACGCTTCTATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGa                                                                                                <  1:914103/150‑1 (MQ=255)                                  agagGCACTGGAGCGAATTGGCGAACGCTTATATCGCCCACCCGCACAAAACGCTACCGGCAGCGGGATTGGGCTATCGATTGTCCACCGAAACGCCAAATTGCATGGCATGAATGTTGAATTTCGGAATGCGGAACAAGTGGGATTTGa                                                                                                >  2:937690/1‑150 (MQ=255)                                         cTGGCGCGAATTGGCGAACGCTTCTATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAg                                                                                         <  2:9580/150‑1 (MQ=255)                                         cTGGCGCGAATTGGCGAACGATTCTATCGACCACCCGGACAAACCGCTACCGGCAGCGGGATTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAg                                                                                         <  2:798590/150‑1 (MQ=255)                                               cgAATTGGCGAACGCTTCTATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGc                                                                                   >  2:836179/1‑150 (MQ=255)                                                 aaTTGGCTAACGCTTCTATCGCCCCCCCGGACAAACCGCGACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTg                                                                                 <  2:200713/150‑1 (MQ=255)                                                      gCGAACGGTTCTATCGCCCACCCGGACCAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGATTTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAAc                                                                            <  1:415597/150‑1 (MQ=255)                                                       ggAACGCTTCTCTCGCCCACCCGGACAACCCGCTTCCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACt                                                                           <  1:502965/149‑1 (MQ=255)                                                        gAACGCTTCTATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACtt                                                                          >  2:784531/1‑150 (MQ=255)                                                        gAACGCTTCTATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACtt                                                                          >  1:361830/1‑150 (MQ=255)                                                          aCGCTTCTATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTtct                                                                        >  1:500792/1‑150 (MQ=255)                                                           cggttatATCGCCCACCCGGACAAATCGGTACCGGCTGCGGGCTTGGGCTATGGATTGTCCATCCAATCGGAAAATTGCATGGCATGAATTTTGAATTTGGTAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTtctc                                                                       <  1:802051/144‑1 (MQ=255)                                                           cGCTTCTATCGCCCACCCGGACAAACCGCTACAGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGCCGAAGGTAACCTGGTAACTtctc                                                                       >  2:92868/1‑150 (MQ=255)                                                            gCTTCTATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATAGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTctct                                                                      <  1:272069/150‑1 (MQ=255)                                                               tgtATCGCCCACCCGGACCAAGCGCCACCGGCAGCGGGCGTGGGCTATCGATTGTCGAGCGAATCGCCAAATTGCATGGCATTAATGTTTAATTTGGGATTGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCGGGTAACTTCTCTGTc                                                                   <  2:602023/148‑1 (MQ=255)                                                               tCTATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTc                                                                   <  2:147605/150‑1 (MQ=255)                                                                cTATCGCCCACCCGGACAACCCGCTACCGGCCGCGGGCTTGGGCCATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCt                                                                  <  2:842916/150‑1 (MQ=255)                                                                 tATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCCGCGAATCGCCAAATTGCATGGCAAGAATCTTGAATTTGGGAATGCGGAACAAGGTGGATTTGACGCGAAGGTAAGCTGGTAACTTCTCTGTCTa                                                                 >  1:521720/1‑150 (MQ=255)                                                                   tCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATg                                                               >  1:174016/1‑150 (MQ=255)                                                                   tCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATg                                                               >  1:928874/1‑150 (MQ=255)                                                                     gCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTACTCTGTCTATgat                                                             >  2:465254/1‑149 (MQ=255)                                                                      cccACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATgaga                                                            <  1:592174/150‑1 (MQ=255)                                                                          cccGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCg                                                        <  2:150639/150‑1 (MQ=255)                                                                             ggACAAACCGCTACCGGCTGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTa                                                     <  1:737792/150‑1 (MQ=255)                                                                                cAAACCGCTACCGGCAGGGGGCTTGGGCTAGCGATTGTCCCGCGAATCGACAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATGTGAGGCGAAGGTTAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTaaac                                                  >  1:395812/1‑149 (MQ=255)                                                                                cAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTaaaa                                                  >  2:688051/1‑150 (MQ=255)                                                                                    ccGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGAc                                              >  1:372033/1‑150 (MQ=255)                                                                                      ggttccGGCTGCGGGCTTGGGATATCGATTGTCCAGCGATTCGCCAAATTGCATTGCATGAATGTTGAATTTGGGATTGCGGATCAAGGTGGATTTGATGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGActc                                            <  1:225448/146‑1 (MQ=255)                                                                                       atcccGGCAGCGGGGTGGGCCAACCGATTGGCCACCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGCAATGCGGAACACGGTGGTTTTGAGGCGAAGGTACGCTGGTAACTTCTCTTTCTATGAGAGCCGTTAAAACGActct                                           <  2:104267/147‑1 (MQ=255)                                                                                                 cGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGACTTTGGGAATGCGGAACAAGGTGGATTTGAGCCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGAtttt                                 <  1:549217/150‑1 (MQ=255)                                                                                                 cGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGAtttt                                 <  2:410833/150‑1 (MQ=255)                                                                                                   ggCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTAc                               >  1:795185/1‑150 (MQ=255)                                                                                                    gCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACt                              >  1:300702/1‑150 (MQ=255)                                                                                                        gggCTATCGATTGTCCAGCGAATCGCCAAATGGCATGGCATGAAGGTTGAATTTGGGAATGCGGAACAAGGTGGAGTCGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATa                          <  2:319102/150‑1 (MQ=255)                                                                                                         ggCTATCGATAGTCCACCCACTCGCCAAATTGCATGGCATGAAAGTTGAATTTTGGAATGCGGAACAAGGTGGATTTGAGGCTAATGTAAGCTGGTACCTTCTCTTTCTATTAGAGCCGTTAAAACGACTCTCATAGATTTTACTAAttg                         <  2:153192/150‑3 (MQ=255)                                                                                                          gCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGc                        <  2:344080/150‑1 (MQ=255)                                                                                                          gCTATCGATTGTCCAGCGAAGCGCCTAATTGCATGGCATGATTGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTTATAGc                        <  1:543806/150‑1 (MQ=255)                                                                                                           cTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCa                       >  1:35249/1‑150 (MQ=255)                                                                                                                     tCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGTAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAAc             <  1:491864/150‑1 (MQ=255)                                                                                                                      ccAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAAcc            >  1:266349/1‑150 (MQ=255)                                                                                                                        aGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGt          >  2:246834/1‑150 (MQ=255)                                                                                                                              accccAAAATGCAAGGCAAGAATGATGAATTAGGGAACGCGGAAAAAGGTGGATTTGAGGCGAAGGTAAGCTGGAAACTTCTCTGTCAATGAGAGCCGCTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCaa    <  2:393983/147‑1 (MQ=255)                                                                                                                               cGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCaaa   >  2:148194/1‑150 (MQ=255)                                                                                                                               cGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGAGAAGGTAATCTGGTAACTTCTATGTCTATGAGATCCGTTAAAACGACTCTCATAGATTATACTAATAGCAAAATATAAAACTTCCCCaaa   >  2:300348/1‑150 (MQ=255)                                                                                                                                gCCAAATTGCATGGCATGAATGATGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGTTAAGCTGTTAACTTATCTGTCTATGAGAGCCGTTAAAAAGCCTCTCATATATTTTACTAATATAAAATTATAAACCGTCCCAaaaa  >  1:521144/1‑150 (MQ=255)                                                                                                                                 |                                                                                                                                                     CATCGTGAGGGATAACGGCCCCGGTGTGACACCAGAGGCACTGGCGCGAATTGGCGAACGCTTCTATCGCCCACCCGGACAAACCGCTACCGGCAGCGGGCTTGGGCTATCGATTGTCCAGCGAATCGCCAAATTGCATGGCATGAATGTTGAATTTGGGAATGCGGAACAAGGTGGATTTGAGGCGAAGGTAAGCTGGTAACTTCTCTGTCTATGAGAGCCGTTAAAACGACTCTCATAGATTTTACTAATAGCAAAATATAAACCGTCCCCAAAA  >  NC_000913_3_bme_pgi/3171632‑3171908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.