Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_bme_pgi 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_bme_pgi 3815859 3815940 82 40 [0] [0] 39 [rph]–[rph] [rph],[rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_bme_pgi = 38158580 (0.000)36 (0.640) 31/278 0.8 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913_3_bme_pgi 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

CAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCAT  >  NC_000913_3_bme_pgi/3815796‑3816087
                                                                                                                                                 |                                                                                                                                                  
ttaacacctgcttgctaagcgcaaattcaataaactggcggtgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcc                                                                                                                                                <  1:638163‑M2/5‑1 (MQ=255)
     acctgctttctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGc                                                                                                                                           <  2:22043‑M2/10‑1 (MQ=255)
               taagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatga                                                                                                                                 <  2:672776‑M2/20‑1 (MQ=255)
                 agcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagactaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttgtgcCGTCCCGGGCAGTTCTatgatg                                                                                                                               >  1:728793‑M2/129‑150 (MQ=255)
                   cgctaattcaataacctggcgctgatatggttccctgccttcgctcctcatcttactttacaacagacaaaaaaaaggcgactcctcagtcgccttaaaaatcaggttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgcg                                                                                                                             <  2:805575‑M2/24‑1 (MQ=255)
                     caaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaataagtttgccagcgccgcctactgcCGTCCCCTCCAATTCAATGATGCGcc                                                                                                                           >  1:71015‑M2/125‑150 (MQ=255)
                      aaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGccc                                                                                                                          >  2:98911‑M2/124‑150 (MQ=255)
                      aaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGccc                                                                                                                          >  2:676478‑M2/124‑150 (MQ=255)
                           caataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGACCCCTGCACTTCAATGATGCGCCCGTCtt                                                                                                                     >  1:604020‑M2/119‑150 (MQ=255)
                           caataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttcagcCGTCCCCTGCCCTTCAATGAAGCGCCCGTCtt                                                                                                                     >  2:904914‑M2/119‑150 (MQ=255)
                               aaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatctgtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                                                                                                 <  2:276672‑M2/36‑1 (MQ=255)
                                aactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGGCCCCGGCACTTCAATGATGCGCCCGTCTTCGGtc                                                                                                                >  2:587714‑M2/114‑150 (MQ=255)
                                  ctggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgcagccttctgaCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtgat                                                                                                              >  1:118874‑M2/112‑150 (MQ=255)
                                                 tttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTc                                                                                               <  1:723263‑M2/54‑1 (MQ=255)
                                                     atgccttcgctcctcatcttacttttctacacacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtc                                                                                           <  1:435849‑M2/58‑1 (MQ=255)
                                                                 ctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCagag                                                                               >  1:859578‑M2/81‑150 (MQ=255)
                                                                   atctaacttttctacagacaaaaaaaaaggcgactcatcagtcgcctaaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCCCTTCAAAGATGAGCCCGTCTTCGGTCATCAGTACGTTCAGTTCGGTCTCTGCGGCAGATTc                                                                             >  2:742955‑M2/79‑150 (MQ=255)
                                                                       ttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGGTGATGTCGGTCTCTGCGGCAGAGTCTTCa                                                                         >  1:766195‑M2/75‑150 (MQ=255)
                                                                                  cagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAg                                                              <  1:576447‑M2/87‑1 (MQ=255)
                                                                                      caaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATTATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCGGCGGCAGCGTCTTCACCGTATTCACGATCg                                                          >  2:816789‑M2/60‑150 (MQ=255)
                                                                                         aaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCaa                                                       >  2:943521‑M2/57‑150 (MQ=255)
                                                                                            caaggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAAcc                                                    >  2:493428‑M2/54‑150 (MQ=255)
                                                                                              aggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGc                                                  >  1:583123‑M2/52‑150 (MQ=255)
                                                                                                    ctcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGCGTCTTCAACGTATTACAGATCGCAAACCGCTTCGcc                                            >  1:229194‑M2/46‑150 (MQ=255)
                                                                                                              gccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCCTCACTACGTTCCTGTCGGTCTCTGCGGCGGAGTCTTCAACGGATTCCAGATCGCAAACCGCTTCGCCGTTCCCAAtt                                  >  1:703762‑M2/36‑150 (MQ=255)
                                                                                                                 ataaaaatcagtttgccagcgccgccttctgaCGTCCCGTGCACTTCATTGATGCTCACGTCTTCGGTCATCACAAGGTTAATGTCGGTGTCTGCAGCAGAGTCTTCAACGTATTCCAGATCGCAAACAGCTTCGGCGTTCACAATTCCg                               >  1:542560‑M2/33‑150 (MQ=255)
                                                                                                                    aaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGGCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGCTGGCAAACCGCTTCGACGTTCACAATTCCGCCa                            >  1:564887‑M2/30‑150 (MQ=255)
                                                                                                                     aaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCACCGTATTCCAGATCACAAACCGCTTCGCCGTGCACAATTCCGACAg                           >  1:381750‑M2/29‑150 (MQ=255)
                                                                                                                     aaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAg                           >  2:98773‑M2/29‑150 (MQ=255)
                                                                                                                      aatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTACACGTATTCCAGATCGCAAACCGCTTCGCCGGGCCCAATTCCGACAGa                          >  1:414124‑M2/28‑150 (MQ=255)
                                                                                                                       atcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCATCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGCTCGCAAACCGCTTCGCCGTTCCCCATTCCGACAGaa                         >  2:812414‑M2/27‑150 (MQ=255)
                                                                                                                         cagtttgccagcgcctccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGACTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCACTTCGCCGTTCACAATTCCGACAGAAAc                       <  2:71015‑M2/126‑1 (MQ=255)
                                                                                                                              tgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTCCGTTCATGGCGGTCTCTGCGGCAGAGTCTTCCACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCgg                  <  2:798942‑M2/131‑1 (MQ=255)
                                                                                                                                 cagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCACCGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTa               >  1:323610‑M2/17‑150 (MQ=255)
                                                                                                                                   gcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTAGGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTAcc             <  1:491259‑M2/136‑1 (MQ=255)
                                                                                                                                     gccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCAt           >  1:792936‑M2/13‑150 (MQ=255)
                                                                                                                                        gccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATccc        <  2:750045‑M2/141‑1 (MQ=255)
                                                                                                                                              tgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCAt  <  1:98911‑M2/147‑1 (MQ=255)
                                                                                                                                              tgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCAt  <  1:676478‑M2/147‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                  
CAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCAT  >  NC_000913_3_bme_pgi/3815796‑3816087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: