New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	354734 =	37 (0.830)	9 (0.210)	7/272	4.3	4.1%	noncoding (136/171 nt)	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913_3_bme_pgi	4245166 =	387 (9.140)					noncoding (74/126 nt)	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAAT  >  NC_000913_3_bme_pgi/354592‑354872                                                                                                                                               |                                                                                                                                           ggTTTTTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGAt                                                                                                                                      <  2:614903/149‑1 (MQ=255)      ttGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGAc                                                                                                                                 <  2:523180/149‑1 (MQ=255)      ttGTCGGATGCGTCGCGCGGTGCAGCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCTGATGCCTGATGCGAc                                                                                                                                 <  2:630622/149‑1 (MQ=255)            ggtGCGGCGGGGGGTGCATCCGGCACGGTGTGCAGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGGACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAc                                                                                                                           <  1:65687/147‑1 (MQ=38)              tGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcgc                                                                                                                         >  1:19725/1‑149 (MQ=255)                             aTCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGACTGATGCGACGGTGAGGCGTCTTATCAGGCCTa                                                                                                          >  1:5242/1‑149 (MQ=255)                              tCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCTTCTTCTCAGGCCTAc                                                                                                         >  2:249546/1‑149 (MQ=255)                              tCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAc                                                                                                         >  1:466709/1‑149 (MQ=255)                              tCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCGGGGGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAc                                                                                                         <  1:22731/149‑1 (MQ=255)                                     cTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGt                                                                                                  >  1:769198/1‑149 (MQ=255)                                           gCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCCTCCGACACCATGCACAGATGCCTGATGCGACGCTGACGCGTATTATCCGGCCTTCCCACTGCTTTTac                                                                                            >  1:456109/1‑149 (MQ=38)                                              gATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCTTCTTATCAGGCCTACCCACTGTCTTTACAcc                                                                                         >  1:373554/1‑149 (MQ=255)                                               ataccTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCg                                                                                        >  2:244750/4‑149 (MQ=255)                                                 gCCTGCTGCGACGCTGACGCCTTTTCTCATGCCTACGGACCTGATCCGTATGTCGGATAAGGTGCTCGCTTCGCATCCTACACCATTTTCAGATGCCTTATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGAt                                                                                      <  2:536471/149‑1 (MQ=255)                                                   cTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTGGGAGAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTGTTATCAGGCCTACCAACTGTTTTTACACCGGTaa                                                                                    >  1:219660/1‑149 (MQ=39)                                                          gACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTcc                                                                             >  1:63479/1‑149 (MQ=255)                                                                 aCGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCt                                                                      >  1:74687/1‑149 (MQ=255)                                                                   gcgTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCttt                                                                    >  2:468722/1‑149 (MQ=255)                                                                   gcgTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCttt                                                                    >  1:492663/1‑149 (MQ=255)                                                                     gTTTTATCATGCCTACGGACCTGAACCGGAGGTCGGATCAGGCGCTCGCGTCGCATCCGGCACCATACTCAGATGCCGGCTGCGACGCTGCGGCGTCGGATGAGGCCTGCCCACTGTATTTACACCGATAGTTTTTGCCCCACCttttt                                                                  >  2:935/1‑149 (MQ=255)                                                                      ttttATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAcc                                                                                                        <  2:471184/110‑1 (MQ=255)                                                                      ttttATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAcc                                                                                                        >  1:470794/1‑110 (MQ=255)                                                                      ttttATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAcc                                                                                                        >  1:471184/1‑110 (MQ=255)                                                                      ttttATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAcc                                                                                                        <  2:470794/110‑1 (MQ=255)                                                                      ttttATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTg                                                                 >  1:11015/1‑149 (MQ=255)                                                                         tATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCAc                                                              <  1:640041/149‑1 (MQ=255)                                                                             aTGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtcat                                                          >  1:768757/1‑149 (MQ=255)                                                                             aTGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtcat                                                          >  1:247948/1‑149 (MQ=255)                                                                                  tACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCata                                                     >  1:51563/1‑149 (MQ=255)                                                                                  caCGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATGTTTCCCCCACCTTTTTGCACTCATTCata                                                     <  2:89166/148‑1 (MQ=255)                                                                                                    gTCGGATCAGGCGCTCGCGTCGCATGCTACACCATGCTCAGATGCCTGGTGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGATTTACCACCGATAATTTTTCCCCCCACTTTTTGCACTCATTCATATCAAAAATATATTTcccc                                   >  2:709934/1‑149 (MQ=38)                                                                                                             ggCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATCAAAAATATTTTTCCCCACGAACACg                          >  2:237608/1‑149 (MQ=255)                                                                                                               gggtCGCGTCGCATCCGAGACCATGCTCAGATGCCGGATGCGGCGCTGACGCGTCTTATCAGGCTTACCTACTGTGTTTACTTCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGAt                        <  2:661829/146‑1 (MQ=255)                                                                                                                                 cacCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGAt      <  1:244750/149‑1 (MQ=255)                                                                                                                                 aacCAGGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCATTGTTTTTACACCGATAATTTTCCCCCCACCCTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGAt      <  2:484200/148‑1 (MQ=255)                                                                                                                                    cATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCAATGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATCAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGCTgct   >  1:619526/1‑147 (MQ=255)                                                                                                                                     aTGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTCCACCGATAATTTTTCCCCCACACTTTTGACCTCATGCATATCAAAAATATATTTCCCCACGAAAACAAGTGCTTTCTATCTTCAGAttcat  >  2:452796/1‑145 (MQ=37)                                                                                                                                               |                                                                                                                                           GGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATCTTCAGATGAAT  >  NC_000913_3_bme_pgi/354592‑354872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.