New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	2118562 =	50 (1.120)	9 (0.210)	7/272	4.3	4.0%	noncoding (97/186 nt)	REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913_3_bme_pgi	4245166 =	387 (9.140)					noncoding (74/126 nt)	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATT  >  NC_000913_3_bme_pgi/2118414‑2118707                                                                                                                                                     |                                                                                                                                                  aTAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTg                                                                                                                                                   >  2:526273/1‑149 (MQ=255) aTAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCCCATCCGGCATTCAGTg                                                                                                                                                   >  2:662000/1‑149 (MQ=255)   aagtttGATGCCAGGTGAGGTTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGcc                                                                                                                                                 <  2:487919/146‑1 (MQ=255)      tttGATGCAAGGTGAGGGTGCGGTTGTTTTGTTCGTTGCCTCTTTTTGCCTGATGCGACGCTGACGCGTCTTACCAGCCATACCAGCAGCGAACTGATGACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGa                                                                                                                                              <  2:88141/149‑1 (MQ=25)          aTGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGACTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCCTTCAGTACCTGATGCg                                                                                                                                          >  2:406602/1‑149 (MQ=255)            gCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGCAGGAACAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGAc                                                                                                                                        >  1:18538/1‑149 (MQ=255)                      gCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGt                                                                                                                              <  1:642457/149‑1 (MQ=255)                         gCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGGCGCCGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCtt                                                                                                                           <  1:71790/149‑1 (MQ=255)                           gtttgtttTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGAGACGAGCACAGAACCGTAAGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGACTGATGCGACGCTGACGCGTCTTAt                                                                                                                         >  1:694990/1‑149 (MQ=255)                                     ttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTGGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGGCCCGCCATGTCAGGccaccg                                                                                                               >  1:558836/1‑145 (MQ=21)                                     ttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACa                                                                                                               >  2:621138/1‑149 (MQ=255)                                      tCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAg                                                                                                              <  1:270973/149‑1 (MQ=255)                                       cGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGAATAAGGCGTTCACGCCGCCTCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACacg                                                                                                             >  2:467867/1‑147 (MQ=255)                                             cgatttttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGa                                                                                                       <  2:41463/146‑1 (MQ=255)                                             cGCTTTTTGCCTGATGCGACGCTGATGCGTCTTATCATGCCTACAAGACCCGAACACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACAGGCCCCGa                                                                                                       >  1:740662/1‑149 (MQ=25)                                                      ccTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCCTCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAAc                                                                                              >  1:501739/1‑149 (MQ=255)                                                      ccTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTAAAAACCTGATTCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAAc                                                                                              >  1:532343/1‑149 (MQ=25)                                                          aTGCGACGCTGACGCGTCTTATCAGGCCTACAAGCCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTa                                                                                          <  1:739328/149‑1 (MQ=255)                                                                    gACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCCCAGAACCGTAGGACGGATaa                                                                                >  1:502949/1‑149 (MQ=255)                                                                         gTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGt                                                                           >  1:281870/1‑149 (MQ=255)                                                                          tCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGa                                                                                                                                              <  2:226016/81‑1 (MQ=255)                                                                          tCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGa                                                                                                                                              >  1:226016/1‑81 (MQ=255)                                                                           cTTATTAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCCTGCCTCATCGCGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGCACCGTAGGACGGATAAGGCGttt                                                                         <  1:178050/149‑1 (MQ=25)                                                                            ttATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGttat                                                                        >  2:768700/1‑147 (MQ=255)                                                                              aTCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGt                                                                           >  1:492403/1‑144 (MQ=255)                                                                              aTCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGt                                                                           <  2:492403/144‑1 (MQ=255)                                                                                   gCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTAcgccgc                                                                 >  1:121890/1‑149 (MQ=255)                                                                                   gCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTAcgccgc                                                                 >  2:215793/1‑149 (MQ=255)                                                                                     cTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCAt                                                               >  1:490892/1‑149 (MQ=255)                                                                                                gAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGt                                                    >  1:595249/1‑149 (MQ=255)                                                                                                     caGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCg                                               <  2:226493/149‑1 (MQ=255)                                                                                                      aGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCgg                                              >  1:285258/1‑149 (MQ=255)                                                                                                         aCCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAAc                                           <  1:215793/149‑1 (MQ=255)                                                                                                         aCCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTACTGCTTCTCTTACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAAc                                           <  1:370736/149‑1 (MQ=37)                                                                                                          ccGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAAcc                                          <  2:501739/149‑1 (MQ=255)                                                                                                               ggACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGaaaa                                     <  1:577736/149‑1 (MQ=255)                                                                                                               ggACGGATAAGCCGTTCCCGCCGCATCCGGCATGCAGTGCCTGATGCGACGCGGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGaaaa                                     <  1:42567/149‑1 (MQ=255)                                                                                                                   ggATAAGGGGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGc                                 <  2:262650/149‑1 (MQ=255)                                                                                                                   ggATAAGGGGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGc                                 <  1:313011/149‑1 (MQ=255)                                                                                                                   ggATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGAAGCTGACGCGTCTTATCAGGCCTACCGGTCCCGAGCACAGAACCGGAGGACGGGTAAGACGTTTTGCGCCGCATCCGGCACCCGTTGTCGGACCCGACAAcccg                                 >  1:968/1‑146 (MQ=25)                                                                                                                     aTAAGGCGCTCACACCGCATCCGGCATTCAGTGCCTGATGCGCCGCTGACGCGTCCTAGCAGACCTGCAGGTCCCGAGCACCGAACCATGCGACGGCTAGGGCGAATTACGCCGCATCCGACACCCCTCGTCGGAACCGAACCCAGccc                               >  2:391894/1‑147 (MQ=255)                                                                                                                            gttctagccgcATGCGGCATTCAGTGCCTGATGCGCCGCTGAAGCATAATATCAGGGATAGAGGTCCCGAGAACACAACCGTATGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCAccc                        <  2:162260/143‑1 (MQ=255)                                                                                                                               cACGCCTCATCCGGCATTCAGTGCCTGATGCGACGGTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCTCcccgc                     <  2:368341/149‑1 (MQ=255)                                                                                                                                           ggCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGaa                                            >  1:734380/1‑114 (MQ=255)                                                                                                                                           ggCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGaa                                            <  2:734380/114‑1 (MQ=255)                                                                                                                                           ggCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcat         >  1:543222/1‑149 (MQ=255)                                                                                                                                             cATTCAGTGCCTGATGCGACGCTGACGCGCCTTATCAGGCCTACAGGTCCCGAGTACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcattt       <  1:662000/149‑1 (MQ=255)                                                                                                                                               ttCAGTGCCTGATGCGACGCTGACGCGTCTTATCTGGCCTACAGGTCCCGAGCACAGAACCGTCGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcattttc     <  1:685869/149‑1 (MQ=255)                                                                                                                                               ttCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGTATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTCAAAGcattttc     >  2:633778/1‑149 (MQ=255)                                                                                                                                                  aGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcattttcatt  >  1:733891/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  ATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATT  >  NC_000913_3_bme_pgi/2118414‑2118707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.