New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_bme_pgi 61481 =8 (0.140)62 (1.060) 41/296 0.4 59.4% coding (1784/2907 nt) rapA RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase
?NC_000913_3_bme_pgi = 1050544 77 (1.320)intergenic (+14/+419) insB1/cspH IS1 transposase B/stress protein, member of the CspA‑family

Only 100 of 141 total aligned reads displayed.

CGAATTGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATCCCCCTCTGG  >  NC_000913_3_bme_pgi/1050396‑1050693
                                                                                                                                                    |                                                                                                                                                     
cGAATTGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACc                                                                                                                                                      <  1:365102‑M2/150‑2 (MQ=255)
           gTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACAGTATCAATAAGTTGGAGTCATTACCGACAAtacgta                                                                                                                                           >  1:837787/1‑150 (MQ=37)
             ataACCTGAATCTTCGGCAGCACCTGGCACGGCTGGGACGTAAGTCGCTGTCGTTCTCAAACTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacgtacg                                                                                                                                         <  2:626964/150‑1 (MQ=255)
             ataACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAAtacgtacg                                                                                                                                         <  2:479967/150‑1 (MQ=37)
                 ccTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTg                                                                                                                                     >  1:47661/1‑150 (MQ=40)
                 ccTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTg                                                                                                                                     >  1:290074/1‑150 (MQ=40)
                  cTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAATTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagta                                                                                                                                    <  1:216427‑M2/150‑20 (MQ=255)
                  cTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagta                                                                                                                                    <  1:823653‑M2/150‑20 (MQ=255)
                   tGAATCTGAGGCAGCACCTGGCACGACTGGGACGGAAGGCGCTGGCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCAGTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTgag                                                                                                                                   <  1:884031/150‑1 (MQ=255)
                      aTCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatc                                                                                                                                >  2:588002‑M2/1‑127 (MQ=255)
                        gtgAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACATAGTCATCGGGCATTATCTGAACTTAAATCACTATGATTAAGTTGGAGTCATTACccaatacgctgctccagtagatccg                                                                                                                              >  1:241644‑M2/2‑125 (MQ=255)
                        cTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAg                                                                                                                              <  1:931216/150‑1 (MQ=255)
                         tGAGGCAGCACGTGGCACGGGTGGGAAGGAAGGCGCTGTCGTTCTCAAATTCGGTGGAGCTGCATGACAATGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAgg                                                                                                                             <  2:641992/150‑1 (MQ=14)
                         tGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgg                                                                                                                             >  1:67021‑M2/1‑124 (MQ=255)
                         tGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAgg                                                                                                                             <  1:377764/150‑1 (MQ=255)
                          tagGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAGTCATCGGGCATTTTCTGAACATAATACACTATCAATAAGTTTGAGTCATTACccaatacgctgctccagtagatccggga                                                                                                                           >  2:245686‑M2/2‑122 (MQ=255)
                            ggCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTAAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACcaaatacgctgctccagtagatccgggtt                                                                                                                          <  1:737228‑M2/150‑30 (MQ=255)
                             gcagcaCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTg                                                                                                                         >  1:686673/1‑150 (MQ=255)
                             gcagcaCCTGGCACGGCTGGGACGGAAGTCGCTGGCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGGCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATAACccaatacgctgctccagtagatccgggtgg                                                                                                                         >  2:405170‑M2/1‑120 (MQ=255)
                                gcaCCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCt                                                                                                                      <  2:345253/150‑1 (MQ=255)
                                gcaCCTGGCACGGCGGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGAATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaat                                                                                                                      >  2:243410‑M2/1‑117 (MQ=255)
                                      ggCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcagg                                                                                                                >  1:198537‑M2/1‑111 (MQ=255)
                                        cACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAACTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGCACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGCGATCAGGATTGGCTACTTTGAg                                                                                                              <  2:101082/150‑1 (MQ=255)
                                             cggggacGGAAGTCGCTGTCGTTCTCAAAAGCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaaca                                                                                                         >  1:906647‑M2/3‑104 (MQ=255)
                                             cTGGTACGGATGTAGCTGTCCTTCTCATAATCGGTGTATCTGCATGACATTGTCATCGGTCATAATCTGATCATAAAACACTATCAATAAGTTTGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaaca                                                                                                         >  1:399176‑M2/1‑104 (MQ=255)
                                                   cGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcacca                                                                                                   >  1:82533‑M2/1‑98 (MQ=255)
                                                    ggAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCtt                                                                                                  >  1:193102/1‑150 (MQ=255)
                                                    ggAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCtt                                                                                                  >  1:246276/1‑150 (MQ=255)
                                                         tCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggc                                                                                             <  1:334593‑M2/150‑59 (MQ=255)
                                                          cGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAACACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGAGCCGGATTGTCTACTTTGAGTATAACATCCTTGTGaaa                                                                                            <  2:622595/150‑1 (MQ=255)
                                                               tCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTcc                                                                                       <  1:323382/150‑1 (MQ=255)
                                                                 gTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCt                                                                                     <  2:686673/150‑1 (MQ=255)
                                                                  ttCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACAGTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatcagggttgaatggcaggtctaacatcaccatgtggctggcgcacg                                                                                    <  1:510421‑M2/150‑68 (MQ=255)
                                                                  ttCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCtt                                                                                    >  2:307307/1‑150 (MQ=255)
                                                                    ctcAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTc                                                                                  >  1:809569/1‑150 (MQ=255)
                                                                        aaaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagt                                                                              <  2:734864‑M2/150‑74 (MQ=255)
                                                                        aaaTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagt                                                                              <  2:853471‑M2/150‑74 (MQ=255)
                                                                             ggTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgt                                                                         >  2:900462‑M2/1‑72 (MQ=255)
                                                                             ggTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgt                                                                         >  2:823653‑M2/1‑72 (MQ=255)
                                                                             ggTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCg                                                                         >  2:343325/1‑150 (MQ=255)
                                                                              gTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATTAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctcaagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggggaacttgaagttacgtg                                                                        <  2:764503‑M2/150‑80 (MQ=255)
                                                                              gTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtc                                                                        <  2:544992‑M2/150‑80 (MQ=255)
                                                                                   gCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatacgggttgattggcaggtcaaacatcgccatgtggctggcgaactggaagttacgtcgttca                                                                   <  2:30218‑M2/150‑85 (MQ=255)
                                                                                    cTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcag                                                                  <  1:25558‑M2/150‑86 (MQ=255)
                                                                                    cTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCAc                                                                  <  1:128078/150‑1 (MQ=255)
                                                                                      gCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACta                                                                >  1:749814/1‑150 (MQ=255)
                                                                                        aTGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACtata                                                              >  1:731841/1‑150 (MQ=255)
                                                                                         tGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGACAACTTTGAGAATAACATCCTTGTGAAATCACCCTATCCTCATACCGCTTGCACtatat                                                             >  1:268414/1‑150 (MQ=37)
                                                                                          gACAAAGTCATCGGGCATTATCTGAAAATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAAAATCATTCTGAAATCTCCCTTTCCTCATACCGCTTGCACtatata                                                            >  2:373260/1‑150 (MQ=255)
                                                                                            cAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACt                                                          >  2:161854/1‑150 (MQ=255)
                                                                                                  cATCGGTCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagaaccgatttctgag                                                    >  1:712048‑M2/1‑51 (MQ=255)
                                                                                                   aTCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagaaccgatttctgagc                                                   <  2:912939‑M2/150‑101 (MQ=255)
                                                                                                   aTCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTa                                                   >  2:718993/1‑150 (MQ=255)
                                                                                                   aTCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCAATATATACTGCGGGTa                                                   >  2:52670/1‑150 (MQ=255)
                                                                                                   aTCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATATCCCTTTCCACATAAAGATTGAACTATATACTGAGGCTa                                                   >  1:183881/1‑150 (MQ=37)
                                                                                                    tCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAg                                                  <  1:161854/150‑1 (MQ=255)
                                                                                                     cGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagaaccgatttctgagcac                                                 <  1:916921‑M2/150‑103 (MQ=255)
                                                                                                     cGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAgg                                                 >  2:730017/1‑150 (MQ=255)
                                                                                                      gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagaaccgatttctgagcaca                                                <  1:775115‑M2/150‑104 (MQ=255)
                                                                                                      gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagaaccgatttctgagcaca                                                <  2:816383‑M2/150‑104 (MQ=255)
                                                                                                      gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagaaccgatttctgagcaca                                                >  1:586737‑M2/1‑47 (MQ=255)
                                                                                                      gggCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagaaccgatttctgagcaca                                                >  1:544992‑M2/1‑47 (MQ=255)
                                                                                                        gCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACAGACAATACGTACGCTTGAGATCAGGATTGACTACGTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTATTACCGCTTGGACTATATACTGCGGGTAGGaaa                                              >  2:332486/1‑150 (MQ=38)
                                                                                                            tATCTGAACATAAAACACTCTCAATAAGTTGGAGTCATTACccactacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagaaccgatttctgagcacagcagta                                          >  2:216427‑M2/1‑41 (MQ=255)
                                                                                                             aTCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGAACTATATACTGCGGGTAGGAAAGgcgc                                         >  2:656711/1‑150 (MQ=255)
                                                                                                                   aCATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCagag                                   <  1:405168/150‑1 (MQ=255)
                                                                                                                    cATAAAACACTATCAATAAGTTGGAGTCATTACCGAGAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGATATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAgg                                  <  2:194959/150‑1 (MQ=255)
                                                                                                                    cATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAgg                                  <  2:365102/150‑1 (MQ=255)
                                                                                                                     aTAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagaaccgatttctgagcacagcagtacctgtgcgc                                 <  1:367309‑M2/150‑119 (MQ=255)
                                                                                                                     aTAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAggg                                 >  2:255645/1‑150 (MQ=255)
                                                                                                                      tAAAACACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagcaccgatttctgagcacagcagtacctgtgcgcc                                <  1:741804‑M2/150‑120 (MQ=255)
                                                                                                                       aaaaCACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagaaccgatttctgagcacagcagtacctgtgcgccg                               >  2:25558‑M2/1‑30 (MQ=255)
                                                                                                                       aaaaCACTATCAATAAGTTGGAGTCATTACCGACAATAGGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATTACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGaa                               >  2:116364/1‑150 (MQ=255)
                                                                                                                       aaaaCACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGaa                               >  2:145113/1‑150 (MQ=255)
                                                                                                                       aaaaCACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGaa                               >  2:585289/1‑150 (MQ=255)
                                                                                                                        aaaCACTATCATTAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGaaa                              >  1:867504/1‑150 (MQ=255)
                                                                                                                        aaaCACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGaaa                              >  2:456303/1‑150 (MQ=255)
                                                                                                                         aaCACTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagaacagatttctgagcacagcagaacctgtgcgccggt                             <  2:756871‑M2/150‑123 (MQ=255)
                                                                                                                           cacTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggcttgcgaactggaagttacgtccttcagcgccgagttctgagcaccgcagtgcctgtgcgccggtgt                           <  2:55212‑M2/150‑125 (MQ=255)
                                                                                                                           cacTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagacccgatttctgagcacagcagtacctgtgcgcaggtgg                           <  2:680047‑M2/150‑125 (MQ=255)
                                                                                                                           cacTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagaaccgatttctgagcacagcagtacctgtgcgccggtgt                           <  1:705635‑M2/150‑125 (MQ=255)
                                                                                                                           cacTATCAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagaacagatttctgagcacatcagtacctgtgcgccggagg                           <  2:146576‑M2/150‑125 (MQ=255)
                                                                                                                             cTATCAATAAGTTGGAGTCATTACCGACACTACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGCAAGGCGCGCAGAGGGAAATATaa                         >  2:498665/1‑150 (MQ=255)
                                                                                                                             cTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATaa                         <  2:290074/150‑1 (MQ=255)
                                                                                                                                 cAATAAGTTGGAGTCATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagaaccgatttctgagcacagcagtacctgtgcgccggtgtcttctt                     <  2:235813‑M2/150‑131 (MQ=255)
                                                                                                                                  aaTAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTg                    <  1:215165/150‑1 (MQ=255)
                                                                                                                                  aaTAAGGTGGAGTCATTACccaatacgctgctccagtagatcctggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagaaccgatttctgagcacagcagtacctgtgcgccggtgtcttcttc                    >  1:828079‑M2/1‑19 (MQ=255)
                                                                                                                                             gTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATccc         <  2:809569/150‑1 (MQ=255)
                                                                                                                                              tCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATcccc        >  1:845952/1‑150 (MQ=255)
                                                                                                                                              tCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCGTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTTGGAATGGCGCGCAGAGGGAAATATAAGATTGTTAACTATcccc        >  2:355008/1‑150 (MQ=255)
                                                                                                                                               cATTACccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagaaccgatttctgagcacagcagtacctgtgcgccggtgtcttcttcggcaaaccaggcg       >  2:334593‑M2/1‑6 (MQ=255)
                                                                                                                                               cATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAAGATAAGATTGTTAACTATccccc       >  2:583060/1‑150 (MQ=255)
                                                                                                                                                  tACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATCCCCctct    >  1:504487/1‑150 (MQ=255)
                                                                                                                                                   aCccaatacgctgctccagtagatccgggttgaatggcaggtcaaccatcaccatgtggctggcgaactggaagttacgtccttcagaaccgatttctgagcacagcagtacctgtgcgccggtgtcttcttcggcaaaccaggcggcag   <  2:921663‑M2/150‑149 (MQ=255)
                                                                                                                                                   aCccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagaaccgatttctgagcacagcagtacctgtgcgccggtgtcttcttcggcaaaccaggcggcag   <  1:465851‑M2/150‑149 (MQ=255)
                                                                                                                                                   aCccaatacgctgctccagtagatccgggttgaatggcaggtcaaacatcaccatgtggctggcgaactggaagttacgtccttcagaaccgatttctgagcaaagcagtacctgtgcgccggtgtcttcttcggcaaaccaggcggcag   <  2:437146‑M2/150‑149 (MQ=255)
                                                                                                                                                    ccGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATCCCCCTCTgg  <  2:246276/150‑1 (MQ=255)
                                                                                                                                                    ccGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATCCCCCTCTgg  <  2:193102/150‑1 (MQ=255)
                                                                                                                                                    ccGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATCCCCCTCTgg  >  1:581992/1‑150 (MQ=255)
                                                                                                                                                    ccGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATCCCCCTCTgg  <  1:145113/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
CGAATTGAGCGGTATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGACAATACGTACGCTTGAGATCAGGATTGTCTACTTTGAGTATAACATCCTTGTGAAATCTCCCTTTCCTCATACCGCTTGCACTATATACTGCGGGTAGGAAAGGCGCGCAGAGGGAAATATAAGATTGTTAACTATCCCCCTCTGG  >  NC_000913_3_bme_pgi/1050396‑1050693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.