| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 3946688 | 48 (1.060) | 7 (0.160) | 7/278 | 4.9 | 13.2% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_bme_pgi | = 4171601 | NA (NA) | intergenic (+57/‑36) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAGTAAG > NC_000913_3_bme_pgi/3946540‑3946835 | aGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAATATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTCAATCAGAACGCAGAAGCGGTCtgat < 1:609836/149‑1 (MQ=17)aGGCCGGGTGTGCAAGCGCAGCGATGCGTTTAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtgat < 2:445848/149‑1 (MQ=17) cGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGaaa > 2:797802/1‑149 (MQ=34) ggTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACa < 2:507472/149‑1 (MQ=35) tAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGGTACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAttt < 1:406304/149‑1 (MQ=21) gcAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTg > 1:451434/1‑149 (MQ=35) aGCGATGCGGTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAAGCTGACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCACACGCGGCCTGCTGAAAAAGAATTTACATggc > 2:138259/1‑149 (MQ=11) gCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGt < 1:447151/149‑1 (MQ=35) aGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGcgcg > 1:600177/1‑149 (MQ=35) cGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTcc > 1:66206/1‑149 (MQ=35) cGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTcc < 1:334185/149‑1 (MQ=35) ggTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGCTACAGATTAAATCAGAACGCAGAACCGGCCCGAGGAAACAGAATTTGCCTGGCGGCCGAAGCGCGGTGGTccc > 1:147357/1‑149 (MQ=11) gTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCa > 2:260674/1‑149 (MQ=35) tACTAATAAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGAGCGGCGGTcacag < 2:559403/149‑2 (MQ=255) aCTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc < 2:66206/149‑1 (MQ=35) cTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCt < 1:558823/149‑1 (MQ=35) aaTGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTCTGGCGGATGAGAGAAGATTTTCAGGCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAGTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGa < 2:410396/149‑1 (MQ=255) aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAAAAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGAc > 2:567890/1‑149 (MQ=21) ccGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCACAt > 1:164480/1‑149 (MQ=25) tGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGcc > 1:608497/1‑149 (MQ=35) ggCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTGTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGaa < 1:626580/149‑1 (MQ=21) ggCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGaa < 1:578167/149‑1 (MQ=35) cTTACCCTCACAACCTCTAATATTTTTTGGCGGATGAGAGAAGCTTTTCAGCCTGATACAGATGAAATCAGAACGCAGAAGCGCTCTGATGAAACAGAATTCGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACt < 1:617618/149‑1 (MQ=11) cTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGACTTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACt > 2:498101/1‑149 (MQ=25) ttAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTc > 2:61285/1‑149 (MQ=35) aaCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGaaa > 1:204731/1‑149 (MQ=35) aaCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGGCCCACCTGAACCCATGCCGAACTCAGGAG‑‑TGaaa > 2:445156/1‑149 (MQ=255) cGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACg > 1:689810/1‑149 (MQ=35) ccGAACTTGTTTTGGCGGATGAGAGAATATCTGCAGCCTGATACAGATTACATCAAAACGCAGAAGCGGTCTGATGAAACATCATCTGCTTTGTGCCTGTATAAAGCGGCTCTCACCTGACTCCTTGCCGAACTCAGAAG‑‑TGAAACGcc < 2:369070/149‑1 (MQ=2) gAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGt > 1:486224/1‑149 (MQ=35) gTTTTGGCGGATAGGAGAAGGTTTTCAGCCTGATACAGTTTAAATTAGAACGCAGTAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGTCCCCATGCCGATCTCTGAAG‑‑TGAACCGCCGTAGCGcc < 2:419047/149‑1 (MQ=11) ttttGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGTAGCGCCg > 2:304143/1‑149 (MQ=32) ttGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGACCGCAGAAGCGGTCTGATGAAACATAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCTCCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGTAGCGCCGAt < 1:633970/149‑1 (MQ=12) cGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGTAGCGCCGATGGTa < 2:204731/149‑1 (MQ=32) agaagaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGTAGCGCCGATGGTAGTGTgggg > 1:780487/1‑149 (MQ=32) gaagaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGTAGCGCCGATGGTAGTGTggagc < 2:614483/149‑4 (MQ=17) gCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGAACCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCg > 1:665086/1‑149 (MQ=17) ccTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCga > 1:574954/1‑149 (MQ=32) ccTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCACGGTGGTCCCACATGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGTAGCGCCGACGGTAGGGTGGGGTCTCCCAATGCga > 2:760324/1‑149 (MQ=11) tGATACAGATTAAATCAGACCGCAGAAGCGGTCTGATGAAACATAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCgaga < 2:723425/149‑1 (MQ=17) aTACAGATTAAATCAGAACGCAGAAGCGGTCAGATGAAAAAGAATTTGCCTGGAGGCCGTAACGCGGTGGTCCCACCTGACCCCAT‑CC‑TATTCGGAAGATTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGt > 1:183940/1‑149 (MQ=11) aCAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAg < 1:797802/149‑1 (MQ=32) aTTAAATCAGAACGCAGAAGCGGACTAATGAAACAGAATTAGCCTGGCGACCGTAGCGCGGTGGTCCCACATGACCCCATGCCGAACTCAGAAG‑‑TGAAATGCCGTAGCGCCGACGGTAGTGGTGGGTGTCCCCATGGCAGAGTAGGGaa > 2:173266/1‑149 (MQ=11) aaTCAGAACGCAGAAGCGGTCGGAGGAAACAGAATTTGCCTGGCGGCCGCAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGc < 1:570350/149‑1 (MQ=12) tCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGAGGCCGTAGCGCGGAGGTCCAAGCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCACCCCATGCGAGAGTAGGGAACTGCCa > 2:255637/1‑149 (MQ=11) gAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAAt > 2:450620/1‑149 (MQ=32) gCGGTCTGATGAAACCGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTaa < 1:590113/149‑1 (MQ=17) tCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGTAGCGCCGATGGTAGTGTGGGGGCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAg > 1:758258/1‑149 (MQ=17) gatgaAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAGTaa < 2:14059/149‑1 (MQ=32) atgaAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGTAGCGCCGACGGTAGTGTCGGGTCTCCCCATGCGAGAGTAAGGAACTGCCAGGCATCAAATTAAGCAGTAAg > 2:18497/1‑149 (MQ=12) | AGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAG‑‑TGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAGTAAG > NC_000913_3_bme_pgi/3946540‑3946835 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |