| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 2068389 = | 57 (1.260) | 4 (0.100) | 4/254 | 5.9 | 7.6% | pseudogene (31/159 nt) | yoeH | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| ? | NC_000913_3_bme_pgi | 2068430 = | 47 (1.180) | intergenic (‑11/‑205) | yoeH/yoeA | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/CP4‑44 prophage; putative disrupted hemin or colicin receptor;Phage or Prophage Related; interrupted by IS2 and C‑terminal deletion | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTATCAGCAATTAACCGGACCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAA > NC_000913_3_bme_pgi/2068242‑2068537 | gTATCAGCAATTAACCGGACCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCATCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTc < 1:242113/149‑1 (MQ=255) aTCAGCAATTAACCGGACCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTTTTTCAGACACCATTTTTTCAACTCCGTTTTC‑Ca < 1:15013/149‑1 (MQ=255) tCAGCAATTAACCGGACCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CAc > 2:781931/1‑149 (MQ=255) tCAGCAATTAACCGGACCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGCTACCCCAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CAc < 2:332082/149‑1 (MQ=255) aaTTAACCGGACCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGAcc < 1:74292/149‑1 (MQ=255) ccGGACCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACACCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACAGCAccc > 2:363996/1‑147 (MQ=255) cGGATCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCActct < 2:425873/149‑1 (MQ=255) cGGACCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTCGCTAAACGACGCCAAAGTATTTGTCTTCACGATGATGGTACCTGCGATTTTATACCATGTTTTCAACTCCGTTTTC‑CCCGGACCGCActct > 1:670898/1‑149 (MQ=255) gACCTGATAGTGATATGAGTCTTACCGCATATGCGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTGAACTCCGTTTTC‑CACGGACCGCACTCTTa < 2:652002/149‑1 (MQ=255) gACCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTa < 2:103391/149‑1 (MQ=255) cccTTATACTGATACGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTACTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTAt < 2:260292/148‑1 (MQ=255) ccTTATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAGCTCCGTTTTC‑CACGGACCGCACTCTTATg < 1:667614/149‑1 (MQ=255) ctgatactgataTGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGt > 1:395565/1‑149 (MQ=255) atactgataTGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CGCGGACCGCACTCTTATGTCaa < 2:43869/149‑1 (MQ=255) ctgataTGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTTTACTTTTTTTTC‑TACGGACCGCACTCTTATGTaaatat > 2:581429/1‑146 (MQ=255) tgataTGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGt > 1:37604/1‑149 (MQ=255) gTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCg > 1:32027/1‑149 (MQ=255) ttACCGCATATACGGTCAATTTCAGCGATTAATTACATTATCCACGCCAATGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTgg > 1:657504/1‑149 (MQ=255) tACCGCATATACGGGCAATTTGAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCTTTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGa < 2:557307/149‑1 (MQ=255) aCCGCATATACGTTCAATTTCAGCAATGAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGAt < 1:419670/149‑1 (MQ=255) aCCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGAt < 1:441103/149‑1 (MQ=255) aCCGCATATACGGTCAATTTCAGCAATTAAATACCCTAGGCCGTCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGAt < 1:549074/149‑1 (MQ=255) ataCGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCa < 1:553372/149‑1 (MQ=255) ataCGGTCAATTTCAGCAAGTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCa < 1:266941/149‑1 (MQ=255) taCGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCTAGAGTGCGGTCCGTTGATACAActcg > 2:48053/1‑146 (MQ=255) gCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGacac < 1:146145/149‑1 (MQ=255) aattaattAAATTACCCACGCCAAAGTATTCGTCATCTCAATGGTGGTAGCTTCTTTCAGTCACCATTTTTTCAACTCCGCTTTCACACGAAAGCCAC‑CTTATCTCAAGAGTGCGGTCCGTGGATACAATCAGAGACCGACTGACACGa < 2:532654/149‑1 (MQ=255) taattaCAGTACCCACGCCTAATTATTTGTCATCACAAGGATGGTTCCTTCTTTCGGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACGCTTAGGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTc < 2:389045/149‑1 (MQ=255) ttaCATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCaga < 1:575998/149‑1 (MQ=255) ctacacgaTCCACTCCAAAGTAGTTGTCATCACAATGAGGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCaga < 2:425244/142‑1 (MQ=255) taCATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCagag < 1:445957/149‑1 (MQ=255) aTTATCCACGCCAAAGTATTTGTCATCACAATTATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGACAGCGGaa > 2:575427/1‑149 (MQ=255) aaccACCCCAAAGTAATAGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACAGAACTCTTATGTCAAAAGTGCGGTCCGTGGATACAACCACACACCCACTGACACGAGTCCAAGGAAaca > 2:296405/3‑148 (MQ=255) aCGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACgg < 2:796472/149‑1 (MQ=255) aTTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAg < 1:465582/149‑1 (MQ=255) aTTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAg < 2:159754/149‑1 (MQ=255) ttGTCATCATCATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTc < 1:248933/149‑1 (MQ=255) ttGTCATCACTATGGTGGTTCCTTCTTTCAATCATCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTc < 1:274428/149‑1 (MQ=255) ttGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTc < 2:430119/149‑1 (MQ=255) atcaCAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGGCAGAGGAAACGACGGATATGTTCAGTCGTaaa > 1:538919/1‑149 (MQ=255) tcaCAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTaaaa > 1:122747/1‑149 (MQ=255) caATGATGGTACCTTCCTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAatat < 1:225430/149‑1 (MQ=255) aaTGATGGTACCTTCTTTCAGACACCATTTTTTTTTTTTTGTTTTC‑CACGGACCGCACTCTTATGTCAAAAGACCGGACCGTGGATACAACCAGAGACCGACTGACACGAGACCAAGGAAACGACGGACATGTTCAGTCTTAAAAtatc > 2:536717/1‑149 (MQ=255) atgatgGTACCTTCTTTCAGCCATCATTTTTTCAACTCCGTTTTC‑CACCGACCGCACTCTTATGTCAAGAGTGCGTTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAAtatct < 1:248453/149‑1 (MQ=255) tgatgGTACCTTCTTTCAGACACCATTTTTTCAACTCCTTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAAtatcta < 2:664727/149‑1 (MQ=255) ggtgGTAGCTTCTTGCGGACACCGGTTTTTCGACTCCGTTTTC‑GACGGACCGCACGCTTAGGTCAAGAGTGCGGGCCGGGGATACAACCAGAGAGCGATTGACACGAGTCAGAGGAAACGACGGATATGTGCAGTCGTAAAAgatctag < 2:94833/147‑2 (MQ=255) tACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTTAAATATCTATCacaa > 2:59085/1‑149 (MQ=255) ccTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCaaaaaa < 1:259956/149‑1 (MQ=255) tcttTCAGACACCATTTTTTTTTTTTTTTTTTC‑CACGGGCCGCACTCTTATGTCAATAGTGCGGTCGGTGGATACAACCAGAGACCGATTGAAATTAGTCAGAGGTAACGACGGATATGTTCAGTTGTAAAATATCTATaaaacactat > 2:703352/1‑143 (MQ=255) ctccccATTTTTTCAACCCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAg < 1:134796/145‑1 (MQ=255) cATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATAAAGGTCaa > 1:572001/1‑149 (MQ=255) aTTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCaaa > 1:561194/1‑149 (MQ=255) aTTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATATCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCaaa > 1:326546/1‑149 (MQ=255) cAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAATACATGATTACGGTCAAAAATGttt < 1:694805/149‑1 (MQ=255) cAACTCCGTTTTC‑CACGGACCGCACTCTTATATCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGttt < 2:326546/149‑1 (MQ=255) cGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAAAATAATAAAGGTCAAAAATGTTGGATAtt > 1:73074/1‑149 (MQ=255) gTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATAttt > 1:288580/1‑149 (MQ=255) tC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACaa < 1:398294/149‑1 (MQ=255) | GTATCAGCAATTAACCGGACCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTC‑CACGGACCGCACTCTTATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAA > NC_000913_3_bme_pgi/2068242‑2068537 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |