New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	3798221 =	59 (1.300)	4 (0.100)	4/264	6.1	7.2%	intergenic (+14/+18)	waaL/waaU	O‑antigen ligase/lipopolysaccharide core biosynthesis
	?	NC_000913_3_bme_pgi	3798249 =	50 (1.210)					coding (1064/1074 nt)	waaU	lipopolysaccharide core biosynthesis
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGG  >  NC_000913_3_bme_pgi/3798106‑3798397                                                                                                                                                |                                                                                                                                                     cTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATATTCGTAACAATACAATTAATTAAGAATAATCAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCtata                                                                                                                                                 <  1:734842/149‑1 (MQ=255)    agagatgtgatCAAGTGGGCAAGCAGCATTCAAATTATCATTATATCCGCTATAGTCCTCTGACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACaa                                                                                                                                              <  2:100602/146‑1 (MQ=255)    aGTGATGTGATCATATGGGCACTCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACaa                                                                                                                                              <  2:620442/149‑1 (MQ=255)    aGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACaa                                                                                                                                              <  1:166983/149‑1 (MQ=255)        atgtgatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCATAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACACACTTCTTATCTATTCAACTTa                                                                                                                                          >  2:86740/1‑149 (MQ=255)         tgtgatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTACCTTCTTATATATACAACTTaa                                                                                                                                         >  2:192776/1‑149 (MQ=255)           tgatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTCACAATAAAATTAATTAAGAATAAACAAGTTTAAGAAGTGAATTAAAACTCACTTCTTATATATACAACTTAAtc                                                                                                                                       >  1:554674/1‑149 (MQ=255)           tgatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCCATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAAtc                                                                                                                                       >  2:333319/1‑149 (MQ=255)            gatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTTAtct                                                                                                                                      >  1:745233/1‑149 (MQ=255)             atCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAAtatc                                                                                                                                     >  1:652371/1‑149 (MQ=255)             atCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATATATACAACTTAAtctc                                                                                                                                     >  2:397464/1‑149 (MQ=255)              tCATATGGGCACGTAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATctct                                                                                                                                    <  1:672877/149‑1 (MQ=255)               cATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTAATCGTCATTAATAATCGTAACAATAAAATTAATTAAGCATAAACCAGATTAACTAGTCATTTACAACTCACTTCTTATCTATACTACTTAATCTCtt                                                                                                                                   <  2:793825/149‑1 (MQ=255)                   tGGGCACGCAGCATTCCAATTATCATTATATCCGCTAGAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACt                                                                                                                               <  1:18956/149‑1 (MQ=255)                     ggCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCAGTTAAAGTGTAAAGAACTTAATTTCttttgctt                                                                                                                             >  1:380046/1‑144 (MQ=255)                      gCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGaa                                                                                                                            <  2:379596/149‑1 (MQ=255)                      gCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTAACTTCTTATCTATACAACTTAATTTTTTTATTGaa                                                                                                                            >  1:144379/1‑149 (MQ=255)                       cACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAAt                                                                                                                           <  1:99623/149‑1 (MQ=255)                         cGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTCTCAGATGTTAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTa                                                                                                                         <  1:355555/149‑1 (MQ=255)                                   cAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGttt                                                                                                               >  1:8624/1‑149 (MQ=255)                                    aaTGATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTc                                                                                                              <  1:776053/149‑1 (MQ=255)                                         tCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTAt                                                                                                         <  1:682444/149‑1 (MQ=255)                                         tCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTAt                                                                                                         <  1:682708/149‑1 (MQ=255)                                           aacatatCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTACAGTTTCAGTATct                                                                                                       >  2:628173/4‑148 (MQ=255)                                           aTTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAATGTTTCAGTATCg                                                                                                       >  1:530655/1‑149 (MQ=255)                                            ttATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTAc                                                                                                                                >  1:589928/1‑123 (MQ=255)                                            ttATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTAc                                                                                                                                <  2:589928/123‑1 (MQ=255)                                            ttATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGa                                                                                                      >  2:560321/1‑149 (MQ=255)                                                      cgttgTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTAc                                                                                            <  1:580803/145‑1 (MQ=255)                                                       ataGTCCTCTTACTTGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTAAATTCTTATCTCTTCAACTTTATCTCTTTACTTAATTATTTAAAGTTTCATTATCTATATAttttgtc                                                                                           >  2:518414/1‑146 (MQ=255)                                                         aGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATGTATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGt                                                                                         <  1:622392/149‑1 (MQ=255)                                                              tctTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGTTATCTTTTACCTTATATg                                                                                    >  1:117218/1‑149 (MQ=255)                                                                 taatCGTCATTAATAATCATAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATTTCTTTCCTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTg                                                                                 <  2:593463/146‑1 (MQ=255)                                                                   cTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTggg                                                                               <  1:195180/149‑1 (MQ=255)                                                                    tCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTgggg                                                                              >  1:287522/1‑149 (MQ=255)                                                                         aTTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACt                                                                         >  2:4805/1‑149 (MQ=255)                                                                             ataatCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTAttt                                                                     <  2:287522/149‑1 (MQ=255)                                                                             ataatCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGCAGGGGATACTAttt                                                                     <  2:296079/149‑1 (MQ=255)                                                                                 tCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGtat                                                                 >  1:385541/1‑149 (MQ=255)                                                                                 tCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGtat                                                                 >  1:385407/1‑149 (MQ=255)                                                                                    tAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTGTCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAgt                                                              >  1:628864/1‑148 (MQ=255)                                                                                    tAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGa                                                              >  1:303845/1‑149 (MQ=255)                                                                                           acaatTAATTAAGAAGAAACAAGTTTAAGAAGTGAGTTAAACCTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTatga                                                       <  2:105988/149‑1 (MQ=255)                                                                                                  agtgaGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCg                                                <  1:377739/145‑1 (MQ=255)                                                                                                                  tttAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATg                                <  1:335070/149‑1 (MQ=255)                                                                                                                  tttAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATg                                <  1:334373/149‑1 (MQ=255)                                                                                                                      agaagTGAGTTAAAACGCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAg                            <  2:12368/149‑1 (MQ=255)                                                                                                                        aagTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTTGGGGACCAAATTATATGCGAggg                          >  2:604640/1‑149 (MQ=255)                                                                                                                           tGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGata                       >  1:593249/1‑149 (MQ=255)                                                                                                                               ttAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGAGCAAATTAAATGCGAGGGATATTcc                   >  2:284989/1‑149 (MQ=255)                                                                                                                                     cTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTa             <  2:80057/149‑1 (MQ=255)                                                                                                                                      tCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTAc            <  2:593249/149‑1 (MQ=255)                                                                                                                                      tCACTTCTTATCTAGACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGAAACCTCGGGTACCAAATTAAATGCGAGGGATATTCCGGAGTAc            <  2:738611/149‑1 (MQ=255)                                                                                                                                          ttcttATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCATTATCGATATCTTTTACCGTGTATGTTGGGGATTCTATTTGTATAGATTTATGATGATTCGGGGACCACAGTAAATGCGAGGGATATTCCGGACTACCTGa        >  1:97531/1‑149 (MQ=255)                                                                                                                                                tCTATACAATTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAgg  <  2:703997/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                     CTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGG  >  NC_000913_3_bme_pgi/3798106‑3798397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.