Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_hsa_pgi 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_hsa_pgi 1978503–1979270 1979278 9–776 280 [0] [0] 276 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi = 19785020 (0.000)245 (1.030) 116/180 0.0 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913_3_hsa_pgi 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

Only 100 of 280 total aligned reads displayed.

CTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTT  >  NC_000913_3_hsa_pgi/1978403‑1978598
                                                                                                   |                                                                                                
cTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG                                                                                                  <  1:1651466‑M1/100‑1 (MQ=255)
cTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG                                                                                                  <  2:4944775‑M1/100‑1 (MQ=255)
  gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                                                >  1:2497751‑M1/1‑98 (MQ=255)
   tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                                                >  1:536792‑M1/1‑97 (MQ=255)
    aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtat                                                                                               >  1:91262‑M1/1‑96 (MQ=255)
    aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtat                                                                                               >  1:1581523‑M1/1‑96 (MQ=255)
     cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAGTGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                             <  1:6285610‑M1/100‑6 (MQ=255)
     cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtata                                                                                              <  1:1918852‑M1/99‑5 (MQ=255)
       cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                           >  2:1223908‑M1/1‑93 (MQ=255)
        gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataag                                                                                            <  1:1081262‑M1/98‑7 (MQ=255)
        gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataag                                                                                            <  1:305258‑M1/98‑7 (MQ=255)
            cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGACCACACAAAACACTCAATTACTTCACATAACTGtataagtcatac                                                                                      >  2:6230731‑M1/1‑88 (MQ=255)
              acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactt                                                                                    >  1:3487837‑M1/1‑86 (MQ=255)
                 cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                 <  2:3044916‑M1/100‑18 (MQ=255)
                 cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtca                                                                                         >  2:5797853‑M1/1‑83 (MQ=255)
                     caTACATCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttt                                                                              <  2:3421346‑M1/99‑21 (MQ=255)
                      aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                            <  2:4165157‑M1/100‑23 (MQ=255)
                       tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                           <  2:4650134‑M1/100‑24 (MQ=255)
                       tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                           <  2:4375247‑M1/100‑24 (MQ=255)
                       tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                           >  1:3305265‑M1/1‑77 (MQ=255)
                       tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                           >  1:699508‑M1/1‑77 (MQ=255)
                         cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAACCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                         >  2:5868147‑M1/1‑75 (MQ=255)
                         cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                          <  2:1275940‑M1/99‑25 (MQ=255)
                         cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                          <  2:4748394‑M1/99‑25 (MQ=255)
                         cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                          <  2:5248391‑M1/99‑25 (MQ=255)
                         cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                          <  2:296624‑M1/99‑25 (MQ=255)
                         cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                          <  1:4043204‑M1/99‑25 (MQ=255)
                         cAACGGAGGGGGACTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                          <  2:3747321‑M1/99‑25 (MQ=255)
                          aaCGGAGGGGGTCTGCGATTTTCAATAATGCGTGATGCAGACCACACAAAACACTCAATTACTTAACACAAATGcataagtcttacttttgtttcgggtc                                                                        >  1:5307652‑M1/1‑74 (MQ=255)
                          aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtg                                                                        >  2:3171748‑M1/1‑74 (MQ=255)
                          aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtg                                                                        >  1:3821326‑M1/1‑74 (MQ=255)
                           aCGGAGGGGGGCTGCGATTTTCAATAATGCATGATGCAGATCACACAAAACACTCAATTACTTAACATACATGtataagtcatacttttgttttgggtg                                                                        >  2:4320486‑M1/1‑73 (MQ=255)
                                 gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttc                                                                  <  1:615123‑M1/99‑33 (MQ=255)
                                  ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                >  1:2276300‑M1/1‑66 (MQ=255)
                                  ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                <  1:4280092‑M1/100‑35 (MQ=255)
                                  ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                >  1:1423308‑M1/1‑66 (MQ=255)
                                  ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                >  1:49449‑M1/1‑66 (MQ=255)
                                   gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                                               >  2:2583333‑M1/1‑65 (MQ=255)
                                    ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatc                                                              <  2:2762972‑M1/100‑37 (MQ=255)
                                    ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                                               >  1:2952337‑M1/1‑64 (MQ=255)
                                    ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggcgtatttcaatc                                                              >  2:4051411‑M1/1‑64 (MQ=255)
                                      cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctg                                                            >  1:2798835‑M1/1‑62 (MQ=255)
                                      cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctg                                                            >  2:2266562‑M1/1‑62 (MQ=255)
                                        gCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                           >  2:3502230‑M1/1‑60 (MQ=255)
                                          gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtta                                                         >  2:1585541‑M1/1‑58 (MQ=255)
                                           aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaa                                                        >  1:1305242‑M1/1‑57 (MQ=255)
                                            ttttCAATAATGCGTGATGCAGATCACACAAAACTCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtta                                                         <  2:5353145‑M1/97‑42 (MQ=255)
                                             tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaa                                                       >  1:6204939‑M1/1‑55 (MQ=255)
                                              ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaag                                                    >  2:1007235‑M1/1‑54 (MQ=255)
                                               tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaag                                                    <  1:2210999‑M1/99‑47 (MQ=255)
                                               tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaag                                                    <  2:100254‑M1/99‑47 (MQ=255)
                                                cAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtt                                                  >  2:497283‑M1/1‑52 (MQ=255)
                                                cAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagt                                                   <  2:1863389‑M1/99‑48 (MQ=255)
                                                 aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                 >  1:5666894‑M1/1‑51 (MQ=255)
                                                   taatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                               <  1:3598797‑M1/100‑52 (MQ=255)
                                                     atGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                              <  2:6024033‑M1/99‑53 (MQ=255)
                                                     atGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                              <  1:812426‑M1/99‑53 (MQ=255)
                                                       gCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc                                            >  1:1982932‑M1/1‑45 (MQ=255)
                                                         gTGATGCAGATCACACAAAACACTCAATTCCTGAACATATATGtataagtcacacttttgttgtgggtgtatttcaatctgttaaaaaggttttc                                              <  1:5938911‑M1/95‑53 (MQ=255)
                                                         gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctac                                         >  1:2157330‑M1/1‑43 (MQ=255)
                                                          tGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacg                                        >  2:2634624‑M1/1‑42 (MQ=255)
                                                             tGCAGATCACAAAAAACACTCAATTACTTAACATAGATGtataattcatacttttgttttgggtgtatttcaatctgttacaaagtttttcgctacg                                        >  2:5304414‑M1/1‑39 (MQ=255)
                                                               cAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctag                                    >  1:3684993‑M1/1‑37 (MQ=255)
                                                                aGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                   >  1:5634559‑M1/1‑36 (MQ=255)
                                                                aGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                   >  2:5895647‑M1/1‑36 (MQ=255)
                                                                   tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag                                >  2:1870744‑M1/1‑33 (MQ=255)
                                                                     acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa                             <  1:260388‑M1/100‑70 (MQ=255)
                                                                     acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagca                              >  1:1500597‑M1/1‑31 (MQ=255)
                                                                       acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaa                            >  1:2923923‑M1/1‑29 (MQ=255)
                                                                          aaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatg                        <  1:109776‑M1/100‑75 (MQ=255)
                                                                          aaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaat                         >  1:4142371‑M1/1‑26 (MQ=255)
                                                                           aaCACTCAAGTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgaaagaaaaaaaaaatga                       <  2:809627‑M1/100‑76 (MQ=255)
                                                                             cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                     >  2:867787‑M1/1‑23 (MQ=255)
                                                                             cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                     <  1:4847593‑M1/100‑78 (MQ=255)
                                                                             cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagaaagcaaaaatgaaa                     <  2:5625792‑M1/100‑78 (MQ=255)
                                                                              acTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaac                    <  2:248013‑M1/100‑79 (MQ=255)
                                                                                 cAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                     >  2:4409087‑M1/1‑19 (MQ=255)
                                                                                  aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                <  1:5154685‑M1/100‑83 (MQ=255)
                                                                                  aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagg                 <  1:2899681‑M1/99‑82 (MQ=255)
                                                                                   aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctaacaagcaaaaatgaaacaggaa               <  2:4362706‑M1/100‑84 (MQ=255)
                                                                                    ttACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaat              <  1:4426595‑M1/100‑85 (MQ=255)
                                                                                    ttACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaa               >  2:3299953‑M1/1‑16 (MQ=255)
                                                                                      aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataa            >  1:3153096‑M1/1‑14 (MQ=255)
                                                                                      aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaata             <  2:75136‑M1/99‑86 (MQ=255)
                                                                                       cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataat           >  2:3037937‑M1/1‑13 (MQ=255)
                                                                                       cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataat           >  1:660120‑M1/1‑13 (MQ=255)
                                                                                       cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctaccctagccagcaaaaatg                        >  2:6311902‑M1/1‑13 (MQ=255)
                                                                                         tAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatc          >  1:1136788‑M1/1‑11 (MQ=255)
                                                                                          aaCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcg         <  2:684739‑M1/99‑90 (MQ=255)
                                                                                           aCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaa       <  2:3482231‑M1/100‑92 (MQ=255)
                                                                                           aCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaa       <  1:3278762‑M1/100‑92 (MQ=255)
                                                                                           aCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcg         <  2:2912176‑M1/98‑90 (MQ=255)
                                                                                            cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa      >  2:4345438‑M1/1‑8 (MQ=255)
                                                                                            cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa      >  1:432504‑M1/1‑8 (MQ=255)
                                                                                            cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa      >  1:4536671‑M1/1‑8 (MQ=255)
                                                                                              tAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg    >  1:3708983‑M1/1‑6 (MQ=255)
                                                                                              tAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg    >  2:2199971‑M1/1‑6 (MQ=255)
                                                                                              tAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg    >  1:3924383‑M1/1‑6 (MQ=255)
                                                                                                aaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctccgctagcacgcaaaaatgaaacaggaataatcgaaatgg   >  2:4801128‑M1/1‑4 (MQ=255)
                                                                                                aaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcaagcaagcaaaaatgaaacaggaataatcgaaatggg  <  2:737513‑M1/100‑97 (MQ=255)
                                                                                                   |                                                                                                
CTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTT  >  NC_000913_3_hsa_pgi/1978403‑1978598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.