New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi = 42466991362 (14.570)60 (0.660) 19/286 4.5 4.3% intergenic (‑252/‑113) malE/malK maltose transporter subunit/maltose ABC transportor ATPase
?NC_000913_3_hsa_pgi = 4246723 1351 (14.960)intergenic (‑276/‑89) malE/malK maltose transporter subunit/maltose ABC transportor ATPase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 1369 total aligned reads displayed.

CGTCGCTTTGTGTGATCTCTGTTACAGAATTGGCGGTAATGTGGAGATGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCGTACAGCTGCAAAATGTAACGAAAGCC  >  NC_000913_3_hsa_pgi/4246551‑4246847
                                                                                                                                                    |                                                                                                                                                    
cGTCGCTTTGTGTGATCTCTGTTACAGAATTGGCGGTAATGTGGAGATGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTGAGTTCACTGAAGCCGTGTTCTCATCCTCCAGactcc                                                                                                                                                      >  2:352809/1‑149 (MQ=255)
    gCTTTGTGTGATCTCTGTTACAGAATTGGCGGTAATGTGGAGATGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTccc                                                                                                                                                  <  2:938944/149‑1 (MQ=255)
          tgtgATCTCTGTTACAGAATTGGCGGTAATGTGGAGATGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATaa                                                                                                                                            >  1:372146/1‑149 (MQ=255)
             gATCTCTGTTACAGAATTGGCGGTAATGTGGAGATGCGCACATAAAATCGCCACGATTTTTGCCAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATaaaaa                                                                                                                                         >  2:1471986/1‑149 (MQ=255)
                 tctGTTACAGAATTGGCGGTAATGTGGAGATGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGcc                                                                                                                                     >  1:249836/1‑149 (MQ=255)
                 tctGTTACAGAATTGGCGGTAATGTGGAGATGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGcc                                                                                                                                     >  1:63634/1‑149 (MQ=255)
                        cAGAATTGGCGGTAATGTGGAGATGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGt                                                                                                                              <  1:1347723/149‑1 (MQ=255)
                        cAGAATTGGCGGTAATGTGGAGATGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGt                                                                                                                              >  1:655230/1‑149 (MQ=255)
                        cAGAATTGGCGGTAATGTGGAGATGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTGCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGgtgt                                                                                                                              <  2:972839/149‑1 (MQ=255)
                            aTTGGCGGTAATGTGGAGATGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTggag                                                                                                                          <  1:611265/149‑1 (MQ=255)
                               ggCGGTAATGTGGAGATGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGAt                                                                                                                       <  2:797117/149‑1 (MQ=255)
                                gCGGTAATGTGGAGATGCGCATATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGAtt                                                                                                                      >  2:1404758/1‑149 (MQ=255)
                                gCGGTAATGTGGAGATGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGAtt                                                                                                                      >  2:1515908/1‑149 (MQ=255)
                                  ggTAATGTGGAGATGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTa                                                                                                                    >  2:1377393/1‑149 (MQ=255)
                                   gTAATGTGGAGATGCGCACATAAAATCTCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTaa                                                                                                                   <  1:400543/149‑1 (MQ=255)
                                   gTAATGTGGAGATGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTaa                                                                                                                   <  2:1273862/149‑1 (MQ=255)
                                   gTAATGTGGAGATGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTaa                                                                                                                   <  2:540631/149‑1 (MQ=255)
                                    tAATGTGGAGATGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGGTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAg                                                                                                                  <  2:1058924/149‑1 (MQ=255)
                                       tgtgGAGATGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCCCAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGccg                                                                                                               >  1:204532/1‑148 (MQ=255)
                                           gagaTGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCAtctc                                                                                                           >  1:554412/1‑149 (MQ=255)
                                            ataTGCGCACATAAAATCGCCACGATTTATGCAAGCAAGATCACGAATTTCCTTACATGACCTCGTTTTAGTTCACAGAAGACGTTTTCTCATCCTCCATCCTCCTCCCCCAAAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTcc                                                                                                          <  1:727443/147‑1 (MQ=255)
                                             gaTGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCt                                                                                                         <  2:1173776/149‑1 (MQ=255)
                                             gaTGCGCACATAAAATCGCCACGAATTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCt                                                                                                         <  2:698693/149‑1 (MQ=255)
                                               tGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCtga                                                                                                       <  1:351158/149‑1 (MQ=255)
                                                  gcACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGGGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCtgatga                                                                                                    <  2:378836/149‑1 (MQ=255)
                                                     gcaaaaaTCGTGGCGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTAATCCTCACGCCTCCTCCACCATAAAAAAGCCAGGGGGTGGACGATTTAAGCCATATCCTGATGAAGc                                                                                                 >  1:537565/4‑149 (MQ=255)
                                                     caTAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGc                                                                                                 >  1:15317/1‑149 (MQ=255)
                                                      aTAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCa                                                                                                >  1:1191035/1‑149 (MQ=255)
                                                      aTAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCGTTCATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTACGCCATCTCCTGATGACGCa                                                                                                >  1:911359/1‑149 (MQ=255)
                                                        aaaaTCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGAGTTAAGCCATCTCCTGATGACGCATa                                                                                              >  1:1815/1‑149 (MQ=255)
                                                        aaaaTCGACACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCGCGGTTTAGTTCACAGAAGTCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGTGGGTGGAGGATTTTAGCCATCTCCTGATGACGCATa                                                                                              <  1:104604/149‑1 (MQ=255)
                                                          aaTCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGt                                                                                            <  1:1496322/149‑1 (MQ=255)
                                                               ccACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCAGTGTTCTCATCCTCACGCCTCCTCCCCAATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGCTGAAGCATAGTCAgac                                                                                       >  2:1031463/1‑147 (MQ=255)
                                                                cACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGccc                                                                                      >  2:478168/1‑149 (MQ=255)
                                                                cACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGccc                                                                                      >  1:747968/1‑149 (MQ=255)
                                                                 aCGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGTTTTACGCCATCTCCTGATGCCGCATAGTCAGCCca                                                                                     >  1:594790/1‑149 (MQ=255)
                                                                 aCGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCca                                                                                     >  1:672086/1‑149 (MQ=255)
                                                                 aCGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTAACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCca                                                                                     <  1:949732/149‑1 (MQ=255)
                                                                   gATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCATTCTCCTGATGACGCATAGTCAGCCcatc                                                                                   >  1:842247/1‑149 (MQ=255)
                                                                     tgtatGCAAGCATCATCACGAAATTCATTACATGACCTCGGTTTAGTTCACTGAAGCCGTGTTCTCATCCTCCCGCCACCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCAGATGACGCATAGTCAGCCcatcat                                                                                 <  1:437499/145‑1 (MQ=255)
                                                                        ttGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCATGGGGGGGAGGAGTTAAGCCATCTCCTGAGGACGCATAGTCAGCCCAGAATGaa                                                                              >  2:833431/1‑149 (MQ=255)
                                                                        ttGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGATCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGaa                                                                              <  1:929147/149‑1 (MQ=255)
                                                                         tGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCACCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGACGACGCATAGTCAGCCCATCATGAAt                                                                             <  1:1366305/149‑1 (MQ=255)
                                                                            aagcaaCATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGtt                                                                          >  1:76584/1‑149 (MQ=255)
                                                                             agcaaCATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTg                                                                         >  1:805537/1‑149 (MQ=255)
                                                                             agcaaCATCAAGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAACAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTg                                                                         <  2:173896/149‑1 (MQ=255)
                                                                              gcaaCATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCACAGCATGAATGTTGc                                                                        >  2:882883/1‑149 (MQ=255)
                                                                               caaCATCCCGAAATTCCTTACATGACCTCGGTTTACTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCAGGAATGTAGCt                                                                       >  2:162002/1‑149 (MQ=255)
                                                                               caaCATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCt                                                                       <  2:1193063/149‑1 (MQ=255)
                                                                                  cATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTc                                                                    <  2:748557/149‑1 (MQ=255)
                                                                                   aTCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCg                                                                   <  2:603647/149‑1 (MQ=255)
                                                                                    tCACGAAAATCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCTCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGa                                                                  <  2:297975/149‑1 (MQ=255)
                                                                                    tCACGAAAATCCTAACATGACCTCGGTTTAGTTCACACAAGCCGTGTTCGCCTCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGTTTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGa                                                                  <  1:1095195/149‑1 (MQ=255)
                                                                                     cACTAAATTCCTTACATGACCTCGGTTTAGTTAACAGAAGCAGTTTTCTCATCCTCCCGACTCCTCCCCCATAAAAAAGCAAGGGGGTGGATTATTTAAGCCATCTCCTGATGAAGCAGAGTCAGCCCATCATGAATGTGGCTGTCGAt                                                                 >  2:816585/1‑149 (MQ=255)
                                                                                     cACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCGGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGAt                                                                 >  2:64086/1‑149 (MQ=255)
                                                                                        gAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGc                                                                                        <  2:328057/123‑1 (MQ=255)
                                                                                         aaaTTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACa                                                             <  1:1442206/149‑1 (MQ=255)
                                                                                               cTTACATGACCTCGGTTTAGTTCACAGAAGCCTTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGgttgt                                                       <  1:708704/149‑1 (MQ=255)
                                                                                               cTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGgttgt                                                       >  1:1303372/1‑149 (MQ=255)
                                                                                                ttACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGgttgtt                                                      <  1:1275497/149‑1 (MQ=255)
                                                                                                atACATGACCTCGGTTTAGTTCACAGAAGCCGTGGTCTCATCCTGCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGgttgtt                                                      <  1:787065/148‑1 (MQ=255)
                                                                                                 tACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGGCGATGACAGGTTGTTa                                                     <  1:302137/149‑1 (MQ=255)
                                                                                                 tACATGACCTCGGTTTACTTCACAGAAGCCGGGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTAAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTa                                                     <  2:1291366/149‑1 (MQ=255)
                                                                                                   cATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGTTTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTTCa                                                   >  1:1132841/1‑149 (MQ=255)
                                                                                                      gACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAg                                                >  1:499111/1‑149 (MQ=255)
                                                                                                      gACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCACATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAg                                                <  2:276593/149‑1 (MQ=255)
                                                                                                       ccctggttttAGTTCACAGTAGCCGTGTTCTAATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAgg                                               <  2:1106287/142‑1 (MQ=255)
                                                                                                       cccgcGGTGTCGTGCACAGAAGCCGTGTGCTCATCATCCCGCCTCCTCCCCCATAAAACAGACCGGGGGTGGAGGATTTAAGCCATCTCCTGCTGACGCATAGGCAGCCCATCATGCATGTTGCTGTCGATGACAGGTTGGTACAAAgg                                               <  2:114006/145‑1 (MQ=255)
                                                                                                            ggTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGaa                                          >  2:766602/1‑149 (MQ=255)
                                                                                                            ggTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGCAGaa                                          <  2:421333/149‑1 (MQ=255)
                                                                                                                tAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGc                                      <  1:1249967/149‑1 (MQ=255)
                                                                                                                  gTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGGCGATGACAGGTTGTTACAAAGGGAGAAGGGCAt                                    <  2:195806/149‑1 (MQ=255)
                                                                                                                   ttCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAATAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATg                                   >  1:1114239/1‑149 (MQ=255)
                                                                                                                    tCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATATAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACTGGTTGTTACAAAGGGAGCAGGGCATgg                                  >  2:1439276/1‑149 (MQ=255)
                                                                                                                    tCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATgg                                  <  1:1471986/149‑1 (MQ=255)
                                                                                                                     cacaGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCTGGGGGTGGAGGATTTAAGCCATATCCTGATGAGGCTTAGTCAGCCCAACTTGAAGGTTCCGGTGGATCAAAGGATGTTAAAAAGGGCGAAGGGCATGGc                                 >  2:1228103/1‑149 (MQ=255)
                                                                                                                      acaGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCGTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGCCAGGTTGTTACAAACGGAGAAGGGCATGGCg                                >  2:22277/1‑149 (MQ=255)
                                                                                                                      acaGAAGCCGTGTTCTCATCCTCCCGCCTCCTCACCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCg                                >  2:1351609/1‑149 (MQ=255)
                                                                                                                       caGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGATGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGa                               <  2:565687/149‑1 (MQ=255)
                                                                                                                         gAAGCCGGGTTCTCAACCTCACGCCTCCTCCCCCATAAAACAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGAAGACGCATCGGCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGc                             <  1:992967/149‑1 (MQ=255)
                                                                                                                            gCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAGACGCCAGGGGGTGGAGGATTTAAGCCGTCTCCTGAAGCCGCATAGTCAGCCCATCAGGAATGTTGCTGTCGCTGACAGGTTCTTACAAAGGGAGAAGGGCAGGGCGAGCGTa                          >  2:243381/1‑149 (MQ=255)
                                                                                                                            gCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCGtt                          <  1:115349/149‑2 (MQ=255)
                                                                                                                             ccGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCGTAc                         >  1:1419509/1‑149 (MQ=255)
                                                                                                                              cGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCGTACa                        <  1:329828/149‑1 (MQ=255)
                                                                                                                                tgtTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCGTACAGc                      >  1:1389450/1‑149 (MQ=255)
                                                                                                                                 gtTCTCATCCTCCCGGCTCCTCGCCAATAAATAAGCCAGGTGGTGGAGGATTTAAGCCAGCTCCTGATGACGCAAAGTCAGCCCATCATGAATGTTGCTGTCGATGTCAGGTTGTTACAAAGGGATAAGGGCTTGGCGAGCGTACAGCt                     <  2:1254136/149‑1 (MQ=255)
                                                                                                                                 gtTCTCATCCTCCCGCCTCCTCCCCCATAAACAAGCCAGGGGGTGGAGGATTTAAGCCATCACCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCGTACAGCt                     <  1:876484/149‑1 (MQ=255)
                                                                                                                                  ttCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCGTACAGCTg                    >  1:964704/1‑149 (MQ=255)
                                                                                                                                   tctcATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCGTACAGCTGc                   >  1:469704/1‑149 (MQ=255)
                                                                                                                                    ctcATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCGTACAGCTGCa                  >  1:226493/1‑149 (MQ=255)
                                                                                                                                       aTCCTCCCGCCTCCTCCCCCATAAAAAAGCCCGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGGCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCGTACAGCTGCaaaa               <  1:1228629/149‑1 (MQ=255)
                                                                                                                                       aTCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCGTACAGCTGCaaaa               >  2:5176/1‑149 (MQ=255)
                                                                                                                                        tcctccCGCCTCCTCCCCCATAACAAAGCCCGGGGGTGGAGGATTTAAGCCATCTCCTGCTGACGCCTAGTCAGCCCATCATGAATGTTGCTGGCGATGACAGGTCGTTACAAAGGGAGACGGGCATGGCGAGCGGACAGCTGCAAAAt              <  1:279338/149‑1 (MQ=255)
                                                                                                                                            cccGCCTCCTCCCCCATAAAAAATCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGGTGTTACAAAGGGAGAAGGGCATGGCGAGCGTACAGCTGCAAAATGTaa          <  1:1001063/149‑1 (MQ=255)
                                                                                                                                            cccGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCGTACAGCTGCAAAATGTaa          <  2:724048/149‑1 (MQ=255)
                                                                                                                                            cccGCCTCCTCCCCCATAAAAAAGCCAGGGGGGGGAGGATTTAAGCCATCTCGTGATGAGGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCGTACAGCTGCAAAATGTaa          <  2:66167/149‑1 (MQ=255)
                                                                                                                                            cccGACTCCTCCACCATTAAAATGACAGGGTGTTGATGATTTAAGCCATCTCCTGATGACGCATAGTCAGCACATCATGAATGTTGCTGTCGATGACAGGTTGTTACAATGGGAGAAGTGAATGTCGAGCGTACAGCTGCAAAATGTaa          <  2:909572/149‑1 (MQ=255)
                                                                                                                                              cGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCCTCATGAATGTTGCTGTCGATGACAGGTTGGTACAAAGGGAGAAGGGCATGGCGAGCGTACAGCTGCAAAATGTAACg        >  1:1321222/1‑149 (MQ=255)
                                                                                                                                               gCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCGTACAGCTACAAAATTTACCGa       >  2:1308426/1‑149 (MQ=255)
                                                                                                                                                   cctccCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCGTACAGCTGCAAAATGTAACGAAAGc   <  1:1067255/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
CGTCGCTTTGTGTGATCTCTGTTACAGAATTGGCGGTAATGTGGAGATGCGCACATAAAATCGCCACGATTTTTGCAAGCAACATCACGAAATTCCTTACATGACCTCGGTTTAGTTCACAGAAGCCGTGTTCTCATCCTCCCGCCTCCTCCCCCATAAAAAAGCCAGGGGGTGGAGGATTTAAGCCATCTCCTGATGACGCATAGTCAGCCCATCATGAATGTTGCTGTCGATGACAGGTTGTTACAAAGGGAGAAGGGCATGGCGAGCGTACAGCTGCAAAATGTAACGAAAGCC  >  NC_000913_3_hsa_pgi/4246551‑4246847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.